Casp027918.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- -
- Assembly
- GCA_958507055.1
- Location
- OY293829.1:316528-325847[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.024 3.6 9.7 3.1 2 23 153 174 152 174 0.96 2 16 2.2e-05 0.0034 19.3 4.5 1 23 179 201 179 201 0.98 3 16 0.00039 0.059 15.3 4.2 1 23 207 229 207 229 0.97 4 16 0.0073 1.1 11.3 1.9 1 20 235 254 235 256 0.93 5 16 2.7e-06 0.00041 22.2 0.2 1 23 263 285 263 285 0.98 6 16 0.0015 0.23 13.5 0.1 1 23 555 578 555 578 0.97 7 16 2.9e-05 0.0045 18.9 5.6 1 23 584 606 584 606 0.97 8 16 3.3e-06 0.0005 21.9 4.8 1 23 612 634 612 634 0.98 9 16 3.8e-06 0.00058 21.7 1.9 1 23 640 663 640 663 0.95 10 16 0.0011 0.18 13.9 0.8 1 23 677 699 677 699 0.93 11 16 0.00011 0.017 17.1 4.3 1 23 705 727 705 727 0.98 12 16 2.5e-06 0.00039 22.2 0.5 1 23 734 756 734 756 0.96 13 16 3.2e-06 0.0005 21.9 1.2 1 23 762 784 762 784 0.98 14 16 4.8e-07 7.3e-05 24.5 0.9 3 23 792 812 790 812 0.96 15 16 2.3e-05 0.0036 19.2 0.1 1 23 818 840 818 840 0.99 16 16 0.065 10 8.3 0.7 1 23 845 868 845 868 0.97
Sequence Information
- Coding Sequence
- ATGGAAATGGAAACTATAAACATGAATCAGATTTGCAGGACGTGCAAATGTATCACGCCACAAATGAAATCGGTGTTTGAGGGTTGCGAAAATCCTCACCAAAGTCCCCGTATTGACGAGATGCTAATGGCCTGTGCTTCGGTTCAGGTAATATGCGGAGACGGCTTACCATCGCTCATTTGTCAAGTATGCGTGGAACAATTGAAGACTGCTTTTCTCTTCAAGCGACAGGCCGAAAAGGTAGATGCTGGCCTAAGAGAGTATGCAAAAAACGTCAAAGTTAACGAGATTAAACAAGAGTTGCAGAACTCTGACTTCATGGAATCCCTAAGCACGTTAAACAATCTATTCGAGGACCAAACACCGTCGTTGAAGGAAATTACACAGGAAATTCCGGCAACATCCAAATGTGAGACGGATTACATCCAATTCATGGACAACAATCAAATGCTTCTAACATGTCGGGAGTGCTCAAAAATGTTCACCACTCTAGAGGGGCTTAGATGTCACAAGCGTATACATTCAGGAACAATGTACAAATGCAAGCAGTGTGACAAGGAGTACACTCGCCTGAATCACCTGCAACGCCATGAGCAATCACATTCGCGCAGAAAGGTCCATGTGTGCAGAATTTGCAACAAAACTCTCACCAGAATGGAGCACCTCAAGCGCCATCTGGTGACACATTTGCGCGAGAAACCATTCTCGTGCACCACCTGCAACAGAGGTTTCAACCGCATCGAACACCTGCACAATCATGCATCAAGATGCAAAGGCGACACTGTCTACCCGTGCGATATATGCAACAAGGCGTTCAATCGTGAAGACAGTCTCGAGGTGCACAAAAAGATGCACGACAATCAAACCCCCAAACTGCCCACCATCGACAATTTGGACAATATCGAGGATCATTACTATCAAATCGATCAGGACATTAATGTCACATTCTCAGATCAAGAACAATCGGACGATGATTACGGCGGCATCGATGATGATGACTCGTTCTTCCAGCTGCCGGCGCCGCCGCTGCTCGATACCCATGAAACCGTCGAAGATGATAAGATTAAAGTGGTCGAGCAAATCCAGGCGGCGCAGCAGACGACAGCTTGTGGCGCCCCCGTACAACACCCCAATGATGCAGGAGGTGGCGGTGGTGGTGGCCGCCTAGATGTGGCCGGACACATTTCAGATAGTGATGACATTGGCGACGGTCACAATGATGATGATAGCGGCTTGGATAGGCACGATGATGATGAGCAACATCATCACATTGCCGACATCAATCACACGATGGACAGTGATGCAGATGATGATAGGAAGGAGGATGTGCTGCTGCGTGTCAACAAGGTGTTGAATGATACATCACTATCACTGGACGATGCCGAGGAGTATATGAAGCATGAAGATGTTacaaatgatgatgatgacgatgTTTCCGATGAGGAAGAATTCGTGGACAGCTCCGATTCCGAGTACACACCCAAGAAGGAGGTGACACAAACACCTCAAAAACGTGGCCGAGGTCGTCCGAGGAAGAATGCAGACGCCCCCTCATCTGCCAACAAATCAAAGGCGAAACGAGTACCAGGCAGGCCGAGAGGTAGACCACCAGGTCGTACGAATTCCATCAAAAaggagaaagaagaagaggaataCGGCGAATTCCCGTGCCCCGCCTGCCAGGAAATGTTCAATACCATGTCGGCTTTGGATAGGCATGCCCGCATTCAACATGAAGGTCTCAAGGTTCACAAGTGTTCGGTATGCCAGAAGGAATTCAGCCGAGCCAATCACCTTAAACGTCACTTAACCTCACACTCGTCCCTCAAACCGTTCAGGTGTAATGTGTGCTCGAAAAGCTTCAATAGGCGCGACCATCTCAATCAACATCAAAAACTCCATGACAGACAGAACGATTACCAATGCGACATATGCCAGAAGCCGTTCAACCGACAAGACCATTTGGCCAAGCATAAAGCCTCTAAACATGGCATTGGTGAAAAGATTTGTGTCATGGGGGAGAAGAAGTTCGAATGTCCCATCTGCCATAAGGCATTCACGACGGAAAAGTATCGCGATGTCCACGTCAATGGCCACAAGGGTCAGAAGGAGTATCAATGTAAAGTGTGTGAGAAGACGTTCCTCTCCCGATCACATTTGACGGAGCACATGAAATTCCACAATGAACATTCCAAGAAATTCCTATGCTCCGAATGTGGCCAACGTTTCATCCGAAATGACTATTTGGTCATCCATATGAGGCGACACAGAGGCGAGAAACCGTTCAAATGCAAATACTGTGGCAAAGgTTTTCCAAGAACGACAGATCTCACTGTACATGAGCGTTACCATACTGGCGAGAAAACGCACTTGTGCACCATTTGTGGACGTGGATTTGGAAGGGCGTACAATCTGACCGTGCACATGAGAACACACACCGGTGAGAAACCCTACCAGTGCACCTATTGCGATGCCGCCTTTGCCCAAGGTAATGATCTGAAGGCTCACGTTCGCCGACATACAGGCGAACGTTTCCAATGCGAATTGTGTACGGAAAGTTTCCTTATGGGCTATTTGCTGACACAGCACAAGAGAACTGTTCACGGTTTGAATGTGGTGAGCAATATTCGTCGCCTCCAACCTGTCCACAAGACGGAGAACCCAGACGACCCACCCCCAATAACAATACCACTTCCGAAGCCTGTCATTCCTGAAAATGTAATGTTCAATGCATTGCACGCCAATGCCCTGCATACGAATGCCTTGCATGCGCAGCTGGCTGTGGCGCAGCTGCACCTCGCTAgagaatag
- Protein Sequence
- MEMETINMNQICRTCKCITPQMKSVFEGCENPHQSPRIDEMLMACASVQVICGDGLPSLICQVCVEQLKTAFLFKRQAEKVDAGLREYAKNVKVNEIKQELQNSDFMESLSTLNNLFEDQTPSLKEITQEIPATSKCETDYIQFMDNNQMLLTCRECSKMFTTLEGLRCHKRIHSGTMYKCKQCDKEYTRLNHLQRHEQSHSRRKVHVCRICNKTLTRMEHLKRHLVTHLREKPFSCTTCNRGFNRIEHLHNHASRCKGDTVYPCDICNKAFNREDSLEVHKKMHDNQTPKLPTIDNLDNIEDHYYQIDQDINVTFSDQEQSDDDYGGIDDDDSFFQLPAPPLLDTHETVEDDKIKVVEQIQAAQQTTACGAPVQHPNDAGGGGGGGRLDVAGHISDSDDIGDGHNDDDSGLDRHDDDEQHHHIADINHTMDSDADDDRKEDVLLRVNKVLNDTSLSLDDAEEYMKHEDVTNDDDDDVSDEEEFVDSSDSEYTPKKEVTQTPQKRGRGRPRKNADAPSSANKSKAKRVPGRPRGRPPGRTNSIKKEKEEEEYGEFPCPACQEMFNTMSALDRHARIQHEGLKVHKCSVCQKEFSRANHLKRHLTSHSSLKPFRCNVCSKSFNRRDHLNQHQKLHDRQNDYQCDICQKPFNRQDHLAKHKASKHGIGEKICVMGEKKFECPICHKAFTTEKYRDVHVNGHKGQKEYQCKVCEKTFLSRSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVHKTENPDDPPPITIPLPKPVIPENVMFNALHANALHTNALHAQLAVAQLHLARE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -