Casp015326.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- -
- Assembly
- GCA_958507055.1
- Location
- OY293827.1:21931801-21944125[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00011 0.017 17.1 2.4 1 23 410 432 410 432 0.97 2 17 3.4e-05 0.0052 18.7 1.8 1 20 438 457 438 460 0.94 3 17 0.00016 0.024 16.6 1.0 1 23 466 488 466 488 0.98 4 17 0.00031 0.047 15.7 3.6 3 21 496 514 494 516 0.94 5 17 0.00017 0.026 16.5 4.7 1 23 522 544 522 544 0.99 6 17 3.3e-05 0.0051 18.7 5.3 1 23 550 572 550 572 0.97 7 17 1.2e-05 0.0018 20.1 8.2 1 23 578 600 578 600 0.97 8 17 1.2e-07 1.9e-05 26.3 2.7 1 23 606 628 606 628 0.98 9 17 9.1e-05 0.014 17.3 6.7 1 23 634 656 634 656 0.97 10 17 2.1e-05 0.0032 19.3 5.8 1 23 662 684 662 684 0.97 11 17 2e-06 0.00031 22.5 3.0 1 23 690 712 690 712 0.98 12 17 8.2e-06 0.0013 20.6 7.8 1 23 718 740 718 740 0.98 13 17 3.5e-05 0.0054 18.6 9.1 1 23 746 768 746 768 0.98 14 17 5.4e-05 0.0083 18.0 6.1 1 23 774 796 774 796 0.97 15 17 7.9e-05 0.012 17.5 0.4 1 23 802 824 802 824 0.97 16 17 0.11 17 7.6 5.0 1 23 834 856 834 856 0.98 17 17 1.9e-07 3e-05 25.7 0.7 1 23 862 884 862 884 0.96
Sequence Information
- Coding Sequence
- atGAATAACGATACTCAGAATGTCCTATCAGGGGGACACACATCAAATTCTGAGAATGCGTCTCAGAGACCACCGCCCACGACATCAGTTCCAACCGATCTTCGAGTGAATACCACCGCCTTAAATGCAGTGGCACTTAGTAGTGTTGCAAAATATTGGGTTCTGACAAATTTGTTACCCGGTCCTATTCCTCAGGTGTCAGTCTATGGCTTACCGGGTACCAGTAGAGATAATCAAGGAAAAATACCTCAGGATGGTATGCTGAGTCAGCACGGCCTTCTTCCCACTGATCCCCTACTCCTGCAGCAGCATACACAGATTCCCGTGAGCATAGCTACATCTCAAGGCAATATTGGAATACCTGCGGGTGCCTTACATCTGGAAAATCCACACAACATTACGAATCACCATCAATCCGAGAATTTATCGCAGAATCAAATGTCCCGAGATTTGAGGatgGCACATTCCCAACAGCAGTCTCAACAGAATCAACAGCAGCAACACGGTAATCATGGTAACCAACAACAGAATCTAGTTCAGGTGCAAGTGCAAGACAACCTGGTGTCTGTGATTGAAGACAACAAGGATCAAAAAGATCTGATAAGTGCCCAATTGCAAGCAGCTCAGCTACAGATGaatgataataatcaattaaatcaGCAAGCCTTGACTGTACAACAGCTACAGCATTTGCAAGTGCAGCAAGTATTGGACAATGTTGTCAGAATGGAAAATTCAGTTGAAAATAACCAAAATCAATCCAATAGTGGTCAGGACGCTATGTCCGATCAAATTCAAATTGTGAAAGATGAAAAAACCTTTCAAAATTGCAAATTACTAGCTGGTGCTCAATTTGGTTTACAAGATTTGAAAGGTAATATGATGGATGTGAGAACTGCCGATGGTAGTATTGTTAAAATACAAACTAATCTACAAGAACAGGAATTGGTGAAGACGTTAGGTGTTGATATTGTTCAGAATATGTACAAAGTTAATGTTGATGATCTAAATCAACTATTGGCGTACCACGAGATCTTCGGAAAGTTACAGGGACCTACAAacGAAGTTGGCAATACGAATCAAAATAACCCGGTTCAAAACAacacaaataataatgttaatattcaacaaaatccGGGAGCTATCGCTATAATCGCAAAAGATGAACAAGAAGCGTCGACTAGTAATAATGTAACCAGTGATACAAGTCCTACATTAGCAGGAACTCATGTCTGTGATCTCTGTGGGAAGATGTTCCAGTTTCGTTACCAATTGATAGTACATAGACGTTATCATACGGAGCGGAAGCCATTCACTTGCCagGTCTGTGGAAAAGCTTTTACCAATGCCCAAGAATTAACAAGGCATGGTAAATGCCATTTGGGCGGTAGTATGTTCACATGTGCAGTATGCTTCCATGTATTTGCCAATGATGCTTCATTGGAGAGGCATATGAAGCGACATTCCACAGATAAACCGTACGGCTGTTCTATATGTGGTAAAACTTTCGCCAGGAAGGAACATTTGGATAATCATACCAGGTGTCACACTGGCGAAACACCTTACagATGTCAATTCTGCGCTAAGACGTTCACTCGAAAAGAACACATGGTAAACCACGTTCGCAAGCATACTGGCGAAACACCTCACAGATGTGATATTTGCAAGAAATCTTTTACCAGAAAAGAACATTTCATGAATCATGTGATGTGGCATACAGGTGAAACACCACATCATTGTACCATATGTGGTAAGAAATATACGAGAAAGGAACATTTATCCAATCACATGAGAAGCCATACCAACGATACACCTTTCAGATGTGAAATATGTGGGAAGTCTTTCACCAGAAAGGAACACTTTACGAATCACATTATGTGGCATACTGGAGAAACACCTCACAGATGCGACTTTTGTTCAAAAACATTCACAAGAAAAGAACATTTATTAAATCATGTTCGTCAACATACGGGAGAGTCACCGCATCGTTGTGGATTTTGCAACAAGTCTTTCACTAGAAAAGAACATTTGATCAACCACGTTAGACAGCACACTGGTGAAACACCGTTCCGGTGCAATTTTTGTCCCAAGGCTTTCACAAGAAAAGACCATCTCGTCAACCACGTTAGACAACATACCGGTGAATCACCTCATAAATGTACTTATTGTACCAAGTCATTTACGAGAAAGGAACACTTGAACAACCATGTGAGACAACATACCGGCGAATCTCCGCACAGGTGCCATTTCTGTTCGAAATCGTTTACGCGTAAAGAACATTTAACAAATCACGTTCGAATACACACAGGCGAGGCACCACATTGTTGTAATGTTTGCGCTAAACCGTTCACCCGCAAAGAACATCTTGTCAATCATATGAGATCGCACACTGGCGAAAGACCATTTGCTTGCAACGAATGTGGAAAATCGTTCCCACTGAAAGGCAATCTTCTTTTCCATCAACGTTCGCACAATAAGGGAGCAGCCGCTGAAAGACCTTTCAGaTGCGACTTGTGTGAGAAAGACTTTATGTGTAAGGGACATCTAGTCTCACACAGAAGATCTCATATGGGAGAGAGACCTCATGCTTGTCCTGAATGTGGCAAAACTTTCGTAGAGAAAGGCAACATGATCAGACATATGCGAAAACATACCGCAAATGGCCAGGCTCAAGCACCAATTCCACCGCAGCAAGGCACAAACCAGCAACCAAATACACAGCCTCAGTCTAACAGCAATATACAAATACCGCAAGTGCAAGTTACTCAGAatcagcagcagcagcagcagcaacaacaacaaagtgCAGGTGGTAACATCGTGCAAAATTCTCACATAGCAATACATTCTTCGAACAGTCATCCTGTTGTAGTGCCTACTGCTAATGGTAACGTCCTAGCATCTTATTAG
- Protein Sequence
- MNNDTQNVLSGGHTSNSENASQRPPPTTSVPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGTSRDNQGKIPQDGMLSQHGLLPTDPLLLQQHTQIPVSIATSQGNIGIPAGALHLENPHNITNHHQSENLSQNQMSRDLRMAHSQQQSQQNQQQQHGNHGNQQQNLVQVQVQDNLVSVIEDNKDQKDLISAQLQAAQLQMNDNNQLNQQALTVQQLQHLQVQQVLDNVVRMENSVENNQNQSNSGQDAMSDQIQIVKDEKTFQNCKLLAGAQFGLQDLKGNMMDVRTADGSIVKIQTNLQEQELVKTLGVDIVQNMYKVNVDDLNQLLAYHEIFGKLQGPTNEVGNTNQNNPVQNNTNNNVNIQQNPGAIAIIAKDEQEASTSNNVTSDTSPTLAGTHVCDLCGKMFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNAQELTRHGKCHLGGSMFTCAVCFHVFANDASLERHMKRHSTDKPYGCSICGKTFARKEHLDNHTRCHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLSNHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCNKSFTRKEHLINHVRQHTGETPFRCNFCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLNNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGEAPHCCNVCAKPFTRKEHLVNHMRSHTGERPFACNECGKSFPLKGNLLFHQRSHNKGAAAERPFRCDLCEKDFMCKGHLVSHRRSHMGERPHACPECGKTFVEKGNMIRHMRKHTANGQAQAPIPPQQGTNQQPNTQPQSNSNIQIPQVQVTQNQQQQQQQQQQSAGGNIVQNSHIAIHSSNSHPVVVPTANGNVLASY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01310750;
- 90% Identity
- -
- 80% Identity
- -