Casp027639.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- -
- Assembly
- GCA_958507055.1
- Location
- OY293828.1:86755134-86766984[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.12 18 7.6 1.1 1 20 128 147 128 150 0.80 2 30 3e-05 0.0046 18.8 3.1 1 23 156 179 156 179 0.98 3 30 0.00075 0.12 14.4 1.6 1 23 191 214 191 214 0.97 4 30 0.00033 0.05 15.6 0.7 3 23 223 243 221 243 0.97 5 30 1.4e-06 0.00021 23.1 3.1 1 23 249 271 249 271 0.98 6 30 7.9e-06 0.0012 20.7 0.4 1 23 277 299 277 299 0.98 7 30 0.063 9.6 8.4 0.1 3 21 307 325 306 326 0.95 8 30 0.0062 0.95 11.6 0.1 2 23 398 419 397 419 0.95 9 30 0.097 15 7.8 4.1 1 23 425 447 425 447 0.98 10 30 0.0059 0.91 11.6 1.8 1 23 453 475 453 475 0.94 11 30 4.9e-05 0.0075 18.2 4.0 1 23 481 504 481 504 0.98 12 30 0.0021 0.32 13.0 2.5 1 23 516 539 516 539 0.93 13 30 0.0067 1 11.4 0.8 3 23 550 570 548 570 0.96 14 30 7.1e-07 0.00011 24.0 2.7 1 23 576 598 576 598 0.97 15 30 4.9e-05 0.0076 18.2 0.5 1 23 604 626 604 626 0.98 16 30 0.00061 0.093 14.7 0.1 2 21 634 653 633 654 0.92 17 30 0.49 75 5.6 2.8 1 23 753 775 753 775 0.97 18 30 0.0054 0.84 11.7 2.4 1 23 781 803 781 803 0.91 19 30 1.4e-05 0.0021 19.9 4.6 1 23 809 832 809 832 0.97 20 30 0.0055 0.85 11.7 4.4 1 23 844 866 844 867 0.94 21 30 4.8e-05 0.0073 18.2 0.1 2 23 877 898 876 898 0.97 22 30 0.00012 0.019 16.9 0.6 1 23 904 926 904 926 0.98 23 30 0.00024 0.037 16.0 3.1 1 23 932 954 932 954 0.98 24 30 0.00012 0.019 16.9 0.3 1 21 960 980 960 981 0.95 25 30 6 9.2e+02 2.2 0.8 3 23 1008 1028 1006 1028 0.86 26 30 0.0049 0.75 11.9 1.4 1 23 1063 1086 1063 1086 0.96 27 30 0.00039 0.06 15.3 1.0 3 23 1097 1117 1095 1117 0.97 28 30 3e-07 4.5e-05 25.2 0.8 1 23 1123 1145 1123 1145 0.98 29 30 0.00015 0.023 16.7 2.9 1 23 1151 1173 1151 1173 0.96 30 30 0.00041 0.064 15.3 0.5 1 21 1179 1199 1179 1200 0.93
Sequence Information
- Coding Sequence
- ATGATTGGATCACCAACTGCAATTAAAGACGAATATCCCAAGAAAAAGAAACGAAAACTCAAAGAAAAATCGACACCTAAAACTACAAAAGACAAAACAACAACCAAAAATACCAACAGCACTAACAGCAAACCCAGATCACGTCGTAAAAGCGACAAACCCAAAAGAGTCTTGGTCAGTCATCCACCACCCATTAAACTTGAAGAGCCCATCCACTGTGACAACTGCTCAGACTTTTATTACAATCATGTTGATTTTGCCATACATTCCATCAAACACAGCGAAGACGGCAAATACATGTGTCACATTTGCAGCAGCTACCGAAACGCCAAAAAGTACAGCATTGAAATGCATGTGCGTGCTCACGAAGGCTCCACCAAGTACAAGTGTGAGGTATGCCAAAAGGCCTTCACGATAAGCACGTACGCCTTGGAGCACAAATACTTTCATACTGGCGAGAAACCTTTTCAATGCGAGATATGTGGAAAACATTTCATGTTTTCGCGACAGCTGGCCTCGCATCGCAGGACATCACACTATGAAATACTCACCGGAAGTCCATTGGTCAAGTACGATTGTGACATTTGCAAGAAGCATTACGAATCCGCCTTTGGATTGCGACGTCACAAACTCACAATACACAACGATGTGGATTTGACAGTGATTTGTGAGATTTGTGGCAAGAGAATTTCCACCaaggaaaaattgaaatttcacaTGCGCACTCACACCGGTGATAAGCCGTACCCGTGTGAGGTGTGCGGCAAATGCTTTTCGAAAAAGCATCAGATGATCGAACACATGCGCGTTCATACCGGCGAGAAGCCGTACATTTGTCCTCATTGTGGTAGGGGTTTCTCGCAACGCACGCCACTGGTATTGCATGTCCGCACGCATACTGGGGAGAGGCCTAATATCTGTCGCATATGTAGAAATGGTTTTATTTCGAAAACAGCACTCGAGTCACATATGAAAAATTGTATTCCACCtgccaCTGACGATGTCAAATCTAAACCCTCCAAAAGAAAACGAAAAACTGCTCCAACaaataaatatggaaaaaataaaaagaccAAAATCATCGAAAAAGACAGTGAGTGCAAACAAAAACCAAAATCCAGACGTAAAAACAACACGCCCAAGAAAATCATCGTATCTCATCCACCACCTATGGAACTGGAGGAGCCTATACAGTGCGATCTATGCGATGCCACCTTCAAGAACAATGTGGAATTTGCATTGCATTCGTTGAGCCACAGCGACGATGGCAAGTTCACTTGTCATCTGTGCAACTATCGAAACGCCTCCAAGTATCACTTGGAGATGCACGTACGGGCCCACGAAGGCACCACCAAATACAAATGCGAAATTTGCGACAAGGCATTCACCATCAGCACTCATGCCAGCGAGCACAAGAATTTCCACACTGGCGAGAAACCATTCCAATGTGAGATATGCGGCAAGCATTTCATGTTCTCCTGGCATCTGGCCTCACATCGCCGCACCTCCCACTATGAGATTCTAACAGGTAAGCCACTGGTCAAATACGATTGCACCACATGCAACAAACATTACGAATCAGCCAGTGGCTTGCGTCGACACAACATCAAAAAACACAACCACAACGACATCGATCTGTCAGTTATATGTGAGATATGCGGCAAGCGATTGTCGAGCAAGGAAAAGTTGAAATTTCACAATCGAACGCATACTGGCTACAGGCCGCACGCTTGTCACGTGTGCCCGAAAAGCTTTTCGAAAAAGGATCAGCTGATCGAACACATTCGAACGCATACCGGTGAGAAACCGTACGTCTGCAAATTGTGCGGACGTGGGTTTGCGCAACGGACACCGTTGAAAACGCACGAGAAAACCCACATGAGCGACAGGAATAACATACCGTGTAATATATGTACGAAGACATTTAGAAACAAAGACGACTACGATGTGCATGTGAAGAGTTGCTTTGTTTCTAAATTACCTTTTGCATataattattccatttataaaGTGGAAGATTCAAACACAAGTTATGTGAAAAAGAGGCGAAAACCACGCACAAAAAATAATCGAAACGACAAAACAccaatacaaaataaaacaaggaAACGTCACCAACGAAAATCCGGCACGGAAAAACTCATCGTCAAACCTCATCGACTCGATCAGCCACTCAAATGTAAACATTGTGCGCAAGAATTCCACAACAATCTCGATTTCGCCTTCCATTCCAAGGTGCACACCGATGACAGTTCATTCTCCTGTCACCTGTGCTACTACCGCAACAGCTCCAAAACCCTTCTGGAAACCCATGTGCGGGCACATGAGGGCATCAAAAAATACGAATGTGAGATATGTCACAAATACTTTAATCGCAGCAGTGATGCCATCGAACACAAGTATTTCCACAACGGTGAGCAGCCATTCCAATGTGAGATATGCGGCAAACActttacattctccaaaagtTTGACGACACACCGAAGAAACACTCACTATACGGTAATCACTGGCCGTCCATTGGATAAATTCGATTGTAAAATGTGCAATAAACACTATGCCTTCCAATCAGGTCTTATACGACACAATTCCATGCATCACAAAGAGCTTGGTCAGGATTGCTCAGtggtttgtgacatttgtggcAAACGTATCGCCACCAAGGACAAGCTCAAGTATCACATTCGCATCCACACTGGCTACAAACCCTTCTCGTGTCCCACATGCAATAAGGGTTTCGTCAAGAAGCAAGAGATGAAGATACACGAACGTGTGCACACTGGTGAGAAGCCATTTTGTTGTTCGTATTGTGGGAAAAAGTTTGCACAACTGGCCCCATATAAGTATCACATTAAAACGCATACCGGTGAACGGTCACATGTCTGTATGATTTGTAATAAGGCTTTTATTTCGTTGAGCAATATGAAGATTCACATGAAGAATTGTTTTGAAGTCAAgtATGAAACCAATAATGATATAAATTCCGATGCTGAATCAATAAAACTCGAAGAACCACTGGAATGTATTATATGTGGAACTTTATATTACACAAACTCATCATATAATTTACATTGTCAAATTCACAATTTATACAATACATACCAAAAGACATTCGAACAACCTGTCATCGAAAACTATCAAAATGAAGATCATTGTGAATCTAATAGTTATAATAGAATCATCATGTACGAATGCGATTTCTGTGACAAGAAATTCAAAACGATGCTCGGTATGACATTGCACCGAAACAAAATACACTTCAACATCAACAACGATGTACCGGTCATATGTGAGATATGTGGCAAGCAAATTTGCCGCAAAGGTAGACTCAGATATCACATGCGAGTGCACACTGGTGATAGACCTTATTCGTGTCAAGTGTGCGACAAACGTTTCTCAGTCAAGGACTTGTTGACACAACATATGCGAGTCCATACTGGCGAGAAATCATTCTTGTGTAAATTGTGTGGCAAATCGTATGGGCATCGTTCAGCTTTCAATTATCACATCAAAACTCATACGGGTGAAAAACCGTTTGATTGTCCACTGTGTGGAAAATCATTTATATCGAAAATTACGatgaataaacattttaaaaactgCTCTAAAAAGTAG
- Protein Sequence
- MIGSPTAIKDEYPKKKKRKLKEKSTPKTTKDKTTTKNTNSTNSKPRSRRKSDKPKRVLVSHPPPIKLEEPIHCDNCSDFYYNHVDFAIHSIKHSEDGKYMCHICSSYRNAKKYSIEMHVRAHEGSTKYKCEVCQKAFTISTYALEHKYFHTGEKPFQCEICGKHFMFSRQLASHRRTSHYEILTGSPLVKYDCDICKKHYESAFGLRRHKLTIHNDVDLTVICEICGKRISTKEKLKFHMRTHTGDKPYPCEVCGKCFSKKHQMIEHMRVHTGEKPYICPHCGRGFSQRTPLVLHVRTHTGERPNICRICRNGFISKTALESHMKNCIPPATDDVKSKPSKRKRKTAPTNKYGKNKKTKIIEKDSECKQKPKSRRKNNTPKKIIVSHPPPMELEEPIQCDLCDATFKNNVEFALHSLSHSDDGKFTCHLCNYRNASKYHLEMHVRAHEGTTKYKCEICDKAFTISTHASEHKNFHTGEKPFQCEICGKHFMFSWHLASHRRTSHYEILTGKPLVKYDCTTCNKHYESASGLRRHNIKKHNHNDIDLSVICEICGKRLSSKEKLKFHNRTHTGYRPHACHVCPKSFSKKDQLIEHIRTHTGEKPYVCKLCGRGFAQRTPLKTHEKTHMSDRNNIPCNICTKTFRNKDDYDVHVKSCFVSKLPFAYNYSIYKVEDSNTSYVKKRRKPRTKNNRNDKTPIQNKTRKRHQRKSGTEKLIVKPHRLDQPLKCKHCAQEFHNNLDFAFHSKVHTDDSSFSCHLCYYRNSSKTLLETHVRAHEGIKKYECEICHKYFNRSSDAIEHKYFHNGEQPFQCEICGKHFTFSKSLTTHRRNTHYTVITGRPLDKFDCKMCNKHYAFQSGLIRHNSMHHKELGQDCSVVCDICGKRIATKDKLKYHIRIHTGYKPFSCPTCNKGFVKKQEMKIHERVHTGEKPFCCSYCGKKFAQLAPYKYHIKTHTGERSHVCMICNKAFISLSNMKIHMKNCFEVKYETNNDINSDAESIKLEEPLECIICGTLYYTNSSYNLHCQIHNLYNTYQKTFEQPVIENYQNEDHCESNSYNRIIMYECDFCDKKFKTMLGMTLHRNKIHFNINNDVPVICEICGKQICRKGRLRYHMRVHTGDRPYSCQVCDKRFSVKDLLTQHMRVHTGEKSFLCKLCGKSYGHRSAFNYHIKTHTGEKPFDCPLCGKSFISKITMNKHFKNCSKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -