Casp027617.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Crioceris asparagi
Gene Symbol
-
Assembly
GCA_958507055.1
Location
OY293828.1:86666970-86670039[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0034 0.52 12.4 0.2 1 23 8 31 8 31 0.96
2 25 0.0019 0.29 13.2 1.0 3 23 36 57 34 58 0.95
3 25 0.0013 0.2 13.7 3.3 2 23 64 86 63 86 0.95
4 25 0.00019 0.029 16.3 3.2 1 23 92 115 92 115 0.97
5 25 1e-05 0.0016 20.3 3.1 1 23 120 142 120 142 0.98
6 25 1.8e-05 0.0028 19.5 7.6 1 23 155 177 155 177 0.99
7 25 1.1e-05 0.0017 20.2 1.0 3 23 185 205 184 205 0.98
8 25 6.6e-06 0.001 20.9 3.1 1 23 211 233 211 233 0.98
9 25 1.8e-05 0.0028 19.5 1.2 1 23 239 261 239 261 0.98
10 25 0.0013 0.21 13.6 4.0 2 23 285 306 284 306 0.94
11 25 0.57 87 5.4 3.4 1 23 311 334 311 334 0.96
12 25 3.8e-06 0.00059 21.7 1.3 1 23 340 363 340 363 0.97
13 25 0.0032 0.5 12.4 1.7 2 23 367 389 367 389 0.95
14 25 0.00043 0.066 15.2 3.0 1 23 400 422 400 422 0.95
15 25 0.0089 1.4 11.1 3.8 1 23 427 450 427 450 0.97
16 25 7.8e-06 0.0012 20.7 1.2 1 23 456 479 456 479 0.98
17 25 0.00046 0.07 15.1 0.2 2 23 483 505 482 505 0.95
18 25 0.00051 0.078 15.0 3.2 2 23 512 534 511 534 0.94
19 25 8.8e-05 0.013 17.4 1.5 1 23 540 563 540 563 0.98
20 25 0.00057 0.087 14.8 1.9 1 23 568 590 568 590 0.98
21 25 0.00023 0.036 16.0 8.8 1 23 598 620 598 620 0.99
22 25 5.3e-07 8.2e-05 24.4 1.8 3 23 630 650 629 650 0.98
23 25 7.4e-06 0.0011 20.8 0.7 1 23 656 678 656 678 0.98
24 25 1.8e-05 0.0028 19.5 1.2 1 23 684 706 684 706 0.98
25 25 0.005 0.77 11.8 1.9 1 23 712 734 712 734 0.98

Sequence Information

Coding Sequence
ATGCATCTTAAGCAGAACCCGTTCGCATGCAATCAATGCGACTCAGCTTTTGGCTACAGAGATGTTTTACGTCGACACATTGAAATGACACACGTGAAGACAGATTGCCAATATTGTGGTAAAAGATATCAAAACAGAATAGAGCTTGATGTCCATATTAAACAAGATCATCATATCTCACAAAAAAATCAGTGCGCACATTGCAATCAAGAATTTCAACGTAAAAGACATTTGAGAGTTCATATTGAAAATGTACATTACAATAAGTACAAGCATCAAtgtaaaaattgcaaaaaaggTTTCAATTTTGAAAGCTTGCTTAAACTTCATCAAAAAGTTGAACATGACGGATTCAGATTTACTTGTGAGGAATGTAAAAAATCTTTCAAAGATGAACGCTATTACAAAAAACATTTAGAAACTCATAAACAAACAAATCATTCAACCACTCAAACAAAGACGTATACATGTGAAGTGTGCTCCAAGGAATTTCGAACAAGCAGTCACTATCATCGTCATAGAAGAACGCATGAGGGATCAATTCAGAATATTTGTCACATGTGCGGCAAGAATTTCGCCGCTAAATACGCTCTTAGAGACCATTTGAGAACACATACCGGTGAAAAACCGCACACCTGTGAATATTGTGACAAGAGTTTTGTAAAGCAAAATACACTAACTGTACATAAGAGGATTCACACTAAAGAGAGGCCGTACACGTGTGAGTTTTGTGATAAAACTTTCAGTCAGCGACCATCGTACCTTGTTCACGTAAGGAATCATACGGTTGattctaaatttttattttccaggACGTTCAACAGTACTGAATTGGAACACAAAGATGAACTCAAGTGTCATCAGTGCAATACCAATTTTCCAACATTCAGCAAGTTGAAGAAACATTTAGTTTATCACagagagaaaatattttcatgtgaCTTGTGCGAAAACAAATACAGAGCTGAACGTCATCTGCTGCACCACAAGAAAGTCGTGCATCTCAAACAGACTCCCTATCCATGCAGTCAGTGTGACAAAGCTTTTggatacaaaaaaagtttacgTCGACACATTCAGTCGTTTCACGTGAAGGCAGAATGTCAATATTGCGACAGTAGATATCAAAACAAATTTCACCTTGAGGCCCATATAAAACAAGATCATCCTTCTTTATTCTCCGAAACGGACTTGGAACACAAGTGTAATCAGTGCAATACAAGTTTTGCAACACTGATAAAGTTAAAGAGACATTTAGTTTATCACAAAGAGAAAATGTTTTCATGTGATTTGTGCGAAAAGAAATACAGAGTTGAACATCAACTGTTACACCACAAAAAAGTCGTGCATCTCAAACAGAACCCGTATTCATGTAATCAATGCAACGAAACTTTTGGATACAGAAATAGTTTACGTCGCCACATTCAAACGATACACGTGGAGATAGTTTGCCAATATTGCAATAAACAATATCAAGACAAAATACAGCTTGAGGTCCATATAAAACAAGATCATCCTCtatcacaaaaaaatcaatgcCCACATTGCAATCAAGAATTTCAACGTAAGAGCCATATGAGGGAACATATTGATAATgtacatttcaataaattcaactATAAATGTGAAAGCTGCAACAAGGGCTTCAATTTTGAAAGCAAGCTGAAACTTCATCAAAAGGTAGAACATGACGGATACAGATTTACTTGTGAGGAATGTAAAAAGTCTTTCAAAGATGGGCGCCGTTACAAGGAACATTTGGAAACTCATAAACTCATTCAAACAACGACATATACATGTGAAATATGCTCCAAGGAATTCCGAACAAAGTGTAATTACCATCGTCATAGAAAAACTCATGAAGGATCATCAATCATTGAGAATATTTGTCACATGTGTGGTAAGAATTTCGCCTCAAAATCAGCTCTTAAAGATCATTTGAGAACACATACTGGTGAGAAACCCTTCATTTGTGAATACTGTGACAAGAGCTTTGCGAAGCAATACGTGCTTACTGTACATAAGAGGATTCACACTAAAGAGAGGCCGTACACTTGTGAGTTTTGTGATAAAACTTTCAGTCAGCGACCATCGTACCTTGTCCATGTAAGGAATCATACGGGTGAGAAACCCTATGAATGCCTTATCTGTTTGAAGAGATTTCTTACGAAGACTTTATTGaataatcatcagaaatatcaTGAAAGTGAAGAGAGTAATTAA
Protein Sequence
MHLKQNPFACNQCDSAFGYRDVLRRHIEMTHVKTDCQYCGKRYQNRIELDVHIKQDHHISQKNQCAHCNQEFQRKRHLRVHIENVHYNKYKHQCKNCKKGFNFESLLKLHQKVEHDGFRFTCEECKKSFKDERYYKKHLETHKQTNHSTTQTKTYTCEVCSKEFRTSSHYHRHRRTHEGSIQNICHMCGKNFAAKYALRDHLRTHTGEKPHTCEYCDKSFVKQNTLTVHKRIHTKERPYTCEFCDKTFSQRPSYLVHVRNHTVDSKFLFSRTFNSTELEHKDELKCHQCNTNFPTFSKLKKHLVYHREKIFSCDLCENKYRAERHLLHHKKVVHLKQTPYPCSQCDKAFGYKKSLRRHIQSFHVKAECQYCDSRYQNKFHLEAHIKQDHPSLFSETDLEHKCNQCNTSFATLIKLKRHLVYHKEKMFSCDLCEKKYRVEHQLLHHKKVVHLKQNPYSCNQCNETFGYRNSLRRHIQTIHVEIVCQYCNKQYQDKIQLEVHIKQDHPLSQKNQCPHCNQEFQRKSHMREHIDNVHFNKFNYKCESCNKGFNFESKLKLHQKVEHDGYRFTCEECKKSFKDGRRYKEHLETHKLIQTTTYTCEICSKEFRTKCNYHRHRKTHEGSSIIENICHMCGKNFASKSALKDHLRTHTGEKPFICEYCDKSFAKQYVLTVHKRIHTKERPYTCEFCDKTFSQRPSYLVHVRNHTGEKPYECLICLKRFLTKTLLNNHQKYHESEESN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-