Casp014874.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- ham
- Assembly
- GCA_958507055.1
- Location
- OY293827.1:15706097-15711256[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0046 6.4 8.4 0.0 13 44 33 61 27 61 0.90 2 7 3.5 5e+03 -0.8 7.1 15 40 94 116 63 120 0.51 3 7 0.33 4.6e+02 2.5 0.2 19 38 127 143 123 148 0.87 4 7 2.8 4e+03 -0.5 3.9 4 38 141 171 138 176 0.78 5 7 5e-05 0.07 14.7 0.1 18 41 519 539 511 541 0.88 6 7 3.1e-05 0.043 15.4 2.1 17 44 546 570 540 570 0.88 7 7 0.74 1e+03 1.3 2.0 13 41 571 596 566 597 0.82
Sequence Information
- Coding Sequence
- ATGCAGCACCCTAGTCTCAGACCTTTCGTAGTACGTATGGGTTCAGAGACTTCTCAACATAGTGGCACTGTCGATGAAAGAGAAGATGAAGAAGATGACGATTCCGAAATACGATGCTATGTTTGTGATCAAATCTACAACAACGTCGATAAATTAGACGATCACTTGGTTCATAAGCATAACTATCGCAAAGACGAGTTTAGATGTGACTACTGCCCAAAAGCCTATTCACATCGTCCTTGCCTTATCAAGCATAGAGCTGTTCAACACGGAGAAACCAAGAAATATCACTGTGAAAATTGCCCGAAGGTTTTTACTGATCCAAGCAACTTACAAAGGCACATCAGAATACACCACGTTGGAGCTCGATCGCATGCTTGTCCCGAATGTGGAAAAACATTTGCAACATCATCAGGTCTCAAGCAACATACGCATATCCATTCTTCAGTCAAACCATTTCAGTGTGAAGTCTGTTTTAAGGCCTACACTCAATTCTCGAACCTCTGCCGACACAAGCGAATGCATGCCGATTGCCGCATGCAGATCAAATGCGTCAAGTGTGGTCAGTCGTTTTCAACAGTGACATCACTATCGAAACACAAACGATTCTGTGACTCTACAGCCAGTCCAGCAGAGATTCCAAGTAGTTCACAGCTTCCTATCAATCTAATGGCTAGCAATAACCCTTTCACCTTATACAGACCGACTGGTTGCCACATGCATTTCCCATTTTCGCAATTTCCACCGTATCCTCCACTTCTCTCACCAATGTCAATGCTTCCACCGCTGCTCTTCAATCCCCTGCAAAATATGAAGGCCAAGGAAGATCATTATccaccaaagaaactactcttAAGCTCAGATAGGGTTTCGCCAAAAACTGAACGTTTCACACCGCCAAGAGAATCCCCAGTATCGTCGAAGATAAGTCCACCAAAAGCTGTTGAAGCAAATGTAGCTCCATCACCAGCAAGacctaataatattttgtcaCATCCCAGAGAACAGATAATTTCTCAAATGTCCGATGATGAGGAAAGCTTTCCCAAAGACTTGTCGAAAACTTCAGAGAAAAGTCTCTCAGACCCATCTTCTCCAAGTAGTCAAGAGGACGAACAACCACTGGACCTTAGTGGCTggagaaaaactcaaattgaTCCAGAACCTATAGCCCATAGCGTAGATTCTCCAAGACAGTCACCTGAGCCTATTTCCGTGAAGGATGAGAAGATTGAAGTTGTTGATATTGAagacgaaaaaaaaacttcagtCGAAAAAATGTCCGTTACACCCACTATGGCTTATCCACGACCGATTCATCCGATGCTGGACATGTGTCGACCAAATTTTCCCTACAGCTATCAACCTCCACCACAAACAACAAATGACAGAATGTTGCCCTCACACTTTTCTCCACACCGATTTCCCTTCTTAAATATATTACCACCACAGCGACTGGATCTTCTTAGACCAGGAATGCAGGATCTGAATAACATGCGCCCTTTCCACAATGTGATGCAACAGCAACCACCGGGCAAAGTAAAGGATAGGTATGCCTGTAAATTTTGCGGTAAAGTGTTTCCCAGATCTGCAAATTTAACACGACACTTGAGAACACATACAGGCGAACAACCTTACAAATGCAGGTATTGTGAAAGATCATTCAGTATCTCTAGCAATCTGCAAAGGCACGTTCGAAATATCCATAATAAAGAGAAACCTTTCAAGTGCCCATTGTGTGAAAGATGCTTCGGACAGCAAACCAACTTGGACAGACATTTGAAGAAACATGAAGCAGATGATGGAAATGGTGGCGTTGCTGTAGCCGATTCTCCAGGAAGCAGTAATGAAAACGAACGTGAAGACGCCTGCTTTGATGAAATACGTTCATTTATGGGTAAAGTCACCTATGGAGGTATGGATTATTGTAATCCTACAAGATTGTATGGTTCACCACCGAATCAAGATATCGATGTGGTGGGAAAAGATGACGATGACTCTGaatcatacactgagggaggtGAAGACTACAATATGATAGAGTCAAAAATTAAACAGGAAAAGGACGAGATACTCAATAACAATGATCAGACTATAGAAGTTTCAACTTAG
- Protein Sequence
- MQHPSLRPFVVRMGSETSQHSGTVDEREDEEDDDSEIRCYVCDQIYNNVDKLDDHLVHKHNYRKDEFRCDYCPKAYSHRPCLIKHRAVQHGETKKYHCENCPKVFTDPSNLQRHIRIHHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCVKCGQSFSTVTSLSKHKRFCDSTASPAEIPSSSQLPINLMASNNPFTLYRPTGCHMHFPFSQFPPYPPLLSPMSMLPPLLFNPLQNMKAKEDHYPPKKLLLSSDRVSPKTERFTPPRESPVSSKISPPKAVEANVAPSPARPNNILSHPREQIISQMSDDEESFPKDLSKTSEKSLSDPSSPSSQEDEQPLDLSGWRKTQIDPEPIAHSVDSPRQSPEPISVKDEKIEVVDIEDEKKTSVEKMSVTPTMAYPRPIHPMLDMCRPNFPYSYQPPPQTTNDRMLPSHFSPHRFPFLNILPPQRLDLLRPGMQDLNNMRPFHNVMQQQPPGKVKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCRYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHEADDGNGGVAVADSPGSSNENEREDACFDEIRSFMGKVTYGGMDYCNPTRLYGSPPNQDIDVVGKDDDDSESYTEGGEDYNMIESKIKQEKDEILNNNDQTIEVST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00388974;
- 90% Identity
- iTF_00388974;
- 80% Identity
- iTF_00388974;