Casp007771.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- -
- Assembly
- GCA_958507055.1
- Location
- OY293826.1:53066672-53072065[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-07 5.6e-05 24.3 0.0 4 37 13 46 11 53 0.85
Sequence Information
- Coding Sequence
- ATGGAtccaaagaaaattttaaaatatcccGAACAGAACATGATTGATGCTGTTGAGGCTGTTAATAAGGGAATGTCATATAAAGGTGCCGCAAAGATGTATAGTGTTCCTAGAGTAACATTAATGCGCAAGCATAAGGGAGTAGTACCCCTAAAAAGAAAAATGGGACCTGAAGGCACCTTCACGCTGGAGCAAGAAGCAAAACTTGTTGAGTGGGTTAAAACAATGGCAACTAAAGGGTTTCCTGTGACAAAGGATACTTTCTTGAGAAGTGTAGCTAAATTAGCTGAAGAGTTAAAAGTTACCTTTAAGGGAAATGCCTCTCCAGGTAAAAAGTGGATGAGTTTATTTCTGAAAAGACATCCTGATATTAGCTTCAGAGTATGTCAGAATTTGTCTGCTGTAAGAAAAGGAGTATCccaagaaaatattaacaaatggtTTTTAGAAGTCGAAACATATCTTAAAGACAAGGACTTGCTACAAGTTCTAGATGACCCAAGGAGAGTTTTTAATGCGGATGAAACCGCTTTCTTTCTAAATCCAAAGATAGGTAAAGTTTTGGCTGCTAAAGGGTCAAAGTCAGTGTATACTGCTTCCGGAAATGATGAGAAATTCAATGTTACGACGCTTCTGACTGCCAATGCTATGGGACAAATAGCCCCACCGTTAGTTGTATACCGGTATTCCCGGATTCCTCAGCATATTGCCGAAACATTTCCAGCAGACTGGTCAATTGGAAAGTCAATTAATGGTTGGATGactcaagaattattttttgagtacATCGCCAACATTTTCCTTCCCTGGATTAGGAAAGAGGATATTCAACTACCTGttgtgttttttatggatggtCATACATCCCATATTTCATTTCAACTAAGTACATTTTGTatcgaaaataaaatagaattagtGGCTTTGTATCCTAATTCTACGCATATCCTTCAGCCAATGGATGTTGCTGTTTTCCATGTGTTGAAAACTTCATGGAAACAAAAAGTACATGAGTggagaattgaaaataatggaGAGCAGCTGAAGAAACATCATTTTGCACCGCTTCTTAAGGAAGTATtaccatccataaaaaaatcaaccataGCGAACGGTTTCAGAAAGTGTGGATTGGTGCCATGGGACCCAAAAAATGTGGTAGTAGGACCAAAGTCATCAACTGAGTGCGATAAATCTAAAATGAACGCagacgaaaaaatatttttactaattttaGAGAAAGAAATTGGTATAGATAAATTGGAgacattcaaaaaaatggaaGGAGAGTGGGCAGGTGAATTAGAAGATTCTTCACTCTATAACCTGTGGaagagatataaaaaaaagGAAGCCTTTGACGAGTCTGAGACAACGATGGAAGAGTCTGAAAAAATTGCTGAAGTTGGAGATCCATTTCTGTCCATGATAGAGGAGCCTGGTTCATTGACTGAACAAGAAATaccacatacacacacatacataacCACACCAACAAAAACATCTGCAATAGAAGAGTCTAACCCAGCTAATCAAATAATACAGAAAACACCACCAACGATGCCAACGATGCTATCTTTAAATGTTGATGTTGAACGAAAAGGAATTTCTCCTTCAAGGTTCTATCCGTCTCCATTTAAAAGAGCCTTGCGTTGGATACACCCAGAGGATAAAGCAGCACCGCTCAAAAAACGAAGGGAAGTACTGCCGGCAGTGGCCACATCTCCACAAATGttggaatattttaaaagaaaagaaaacaataagagAAACATTGAGCTTGAAAAAGAACAACGTAAACTAGCGAGGGAAGAAAAAAGGAGAAATGCTGAGAAGAAAGCAGAAGACGCAAGAGAAAAGAAAGCTCAAAAGATGGCAACAAGAAAACGACAAGAGTCCACTTCATCGTCTTCCTCCCAAAGTAATTACTCACTTCAAGGGTCGAGTCGGTCGGAGTgggaagaagaagatgaaggAAATAGTGAGGAAAATATTGCTCCCATACTTAACTTTAATGATTTAAAGGAAGGTGATTATGTACTGGCCGAGTTTAAGGGTGGCAAAAGGAACACCACAATATTCACATATCTGTGTGTTATCCAGACATTAAACTCACCAAAATCTATAGGTGTTATGGGATATAAAAGCATTGACAGCTCAAAAAAAGTGTTTGTGGCTAATGACAAGGATATatcagaaataaattttaatcaaatagTAACTCGACTTCACCCTCCTCAACTTTTATTAAGAGATTCACAAGTGTTTCCAAAACCACAAACTCCAAATGTCTGGAAACCAAATCAGAATCAACCACAACCTAAGCCCACCCCCGATGAGCATTTCAACAAGAATAACGACCAAAAATCCAGCGTAATCGCCGAAGAAATGTTCTGTACAGAATTCGAAGACGGTACTGGAAACGAAACTTTTGAATATTATGATGaccaaaattatgaaaatgtaaTAGAAACCCAAGACACAGAACAACATTTTCAAGAGATCGAAGACAACAACGAAACAACATAG
- Protein Sequence
- MDPKKILKYPEQNMIDAVEAVNKGMSYKGAAKMYSVPRVTLMRKHKGVVPLKRKMGPEGTFTLEQEAKLVEWVKTMATKGFPVTKDTFLRSVAKLAEELKVTFKGNASPGKKWMSLFLKRHPDISFRVCQNLSAVRKGVSQENINKWFLEVETYLKDKDLLQVLDDPRRVFNADETAFFLNPKIGKVLAAKGSKSVYTASGNDEKFNVTTLLTANAMGQIAPPLVVYRYSRIPQHIAETFPADWSIGKSINGWMTQELFFEYIANIFLPWIRKEDIQLPVVFFMDGHTSHISFQLSTFCIENKIELVALYPNSTHILQPMDVAVFHVLKTSWKQKVHEWRIENNGEQLKKHHFAPLLKEVLPSIKKSTIANGFRKCGLVPWDPKNVVVGPKSSTECDKSKMNADEKIFLLILEKEIGIDKLETFKKMEGEWAGELEDSSLYNLWKRYKKKEAFDESETTMEESEKIAEVGDPFLSMIEEPGSLTEQEIPHTHTYITTPTKTSAIEESNPANQIIQKTPPTMPTMLSLNVDVERKGISPSRFYPSPFKRALRWIHPEDKAAPLKKRREVLPAVATSPQMLEYFKRKENNKRNIELEKEQRKLAREEKRRNAEKKAEDAREKKAQKMATRKRQESTSSSSSQSNYSLQGSSRSEWEEEDEGNSEENIAPILNFNDLKEGDYVLAEFKGGKRNTTIFTYLCVIQTLNSPKSIGVMGYKSIDSSKKVFVANDKDISEINFNQIVTRLHPPQLLLRDSQVFPKPQTPNVWKPNQNQPQPKPTPDEHFNKNNDQKSSVIAEEMFCTEFEDGTGNETFEYYDDQNYENVIETQDTEQHFQEIEDNNETT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00388132; iTF_00388136; iTF_00388137; iTF_00388138; iTF_00388139; iTF_00388140; iTF_00388141; iTF_00388144; iTF_00388131; iTF_00388134; iTF_00388135;
- 90% Identity
- iTF_00388132; iTF_00388136; iTF_00388137; iTF_00388138; iTF_00388139; iTF_00388140; iTF_00388141; iTF_00388144; iTF_00388131; iTF_00388134; iTF_00388135;
- 80% Identity
- iTF_00388144;