Casp046278.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- -
- Assembly
- GCA_958507055.1
- Location
- OY293832.1:29409595-29412015[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-08 8.8e-06 26.9 0.0 8 40 2 34 1 39 0.95
Sequence Information
- Coding Sequence
- ATGGCTATAGAAGATGTAAGGTCTGGAACTCAGTCCATTTGTAAAGCTTCAGAAAGTTTTGGTGTTCCAAAAGCAACATTAATTGATCATCTGAAGGGCCgaagcaaacaaacaaaaagaaaaactggTCCACCGCCAATTCTAGGGGAAGATGTGGAGAATCAAATTAAGGAATGGGTCATGAACATTGCTAAATGCGGATTTCCTCTAAACAAGAATGATTTGCTAGATACGGTTCAAAAAATTGTGAAAGATTTGAGGAAAACCCATCTTTTTAAAAATGGGAGACCAGGGCAAAAATGGTATGGAAATTTTTTAAAGCGACATCCAGATATTGCCCTCAGAGAAGCCGAAAGTGTGAGTAGGGGCAGAGCTATAGTCACGAAAGAATATATAAGATCTTGGTTCTCTGACTTGGAGACctacataaaagaaaaaaatcttcaaaaattaTTCGAAGATCCATCAAGAGTCTTCAATGCTGATGAGGTGGGATTTAGCCTATGTCCTAAAAAAGGTAAAGTTCCCAAAggattcaaaaatgtatataacaTCAACATGGGCAATGAAAAAGAGAACATCTCAGTACTCATAGTTATTTCCGCAGAGGGAAAAATTGCACCTCCCTTAGTAATATTTCCGTATGTAAGACCTCCGAAGAGTTTGGTGGACAGCGTTCCCGTATCGTGGGTTCTCGGTAGATCCAGTACTGGTTGGATGAGGAGTGATATTTTCTTCGAATATATAGCTAATGATTTCAATGCTTGGCTGAAGAGAAATAATATTGAGAGACCCATCTTCCTATTCATTGATGGGCATAAATCACATTTGACACTGGCAGTTAGTCAGATTTGTGAAAAACTGGGTATAATTTTGTACGCTCTTCCACCCAATACAACCCATCTGCTACAACCAGCTGACGTCAGTGTTTTTTATCCTATGAAAGTCAGATGGAAAGATACTATACGAGAATGGTGTAAAATTCCAGggaataaaaataagtttttaacaAAAGAAAGATTTTGTCCCCTATTTGAGAAAACGCTTGCTAGTAATGACATGGGAGAAGCAATAAAAAACGGCTTCAGAAAATGTGGTTTGTTCCCCTTAAATCGAGAAGCAGTAGACTACTCAAAGTGCATAAAGAATATGTTGGAAGATTTAAATGAAGTTCCAACAGAAGAATCTTTCAGTAAGGCTGACCTAGGAATATGTGAAAGAGTGATATTCAGACTAAGAGAACAACTAAACTCTAATGGTATTGATACTGACTTGGTCATCCAGATAATTAAGAGATATGGTAAAGAAGTTCTGGAGAATAATGACAGAAAAGAAAAACCTTGTGATAATACAACAGAGCTTTTAAGGACTGGTGACATTATATCACTTGATCAAGCGGAAACATTTCCATGTCAAGTTATAGTAGTCGATGAAAACTTGACTCATGTAGATACAGACTTGAACATAACTCAACCTGAACGCAACATATCTTCCAGTAACCATAATAATAAAACCATTGATGACCTGATTGAAATTATTGAGCAAGAGTACGATAAATCCGAAATATCAGCAATTATGAAATTGGTAAAGGAAACCCAAACTAGCACTCCAAAAAATGCAACAGCTGACTTGGATAAAGACatcgaatttataaaaaaacaagttGAGAGACATGATATAGCTAGTATAAAGACTGAAACTGAAGAAGATACCAAACAAAATGGTACAAAAAATGAatctataattaaaattaatagattaGAAGGAAGATCTGATTATATCGAAAAATATGAGAGAAAAACGGAAAGCTCACCAGAAATGATTATTGGGAACGAAAATATTCCGTGTGTAAATAGAGATCACGGTGCGGAAAATGTATGTATGAAAAATGAGGAGACGGATGTTGATGTGAATGAATTAAACAAAAGTAATATggacaaaattatcattttatcgGATGTACTCATAAATAAATCGAATAATAGTGACTATTCATCACCAGAAGGCTACTTTGGGAGACATCTGAAGTACCCCGAACCaacatcaatgaaaaataaaaaaatcaaagacaaAATGCCCAGTGCAATTTCTTCATTAGAATGGAAAAATTATTAtcttaaaaaagaagaaatgaaaAAGAACAAAGAGGAAGCAATAaaacaaagaaaagaaaagaggAGAATATCTAAAGAAAATCGaataacaaaaaagaagaaaaatgttAAAGGCATAAAtaagtttggaaaaactcaGTCCCAAGCTGTTTCTCCCAAAGAACttggagaaaaaataaaatgtgcaAACTGTGAAGAGGAGCTTATAAGCGATATTGAAGAGGAAgatgataaaaatattggatGCGACAAGTGTCCCTTATGGTTCCACATGAAATGCACGGAATTTTATGGAATTCCGTATTAA
- Protein Sequence
- MAIEDVRSGTQSICKASESFGVPKATLIDHLKGRSKQTKRKTGPPPILGEDVENQIKEWVMNIAKCGFPLNKNDLLDTVQKIVKDLRKTHLFKNGRPGQKWYGNFLKRHPDIALREAESVSRGRAIVTKEYIRSWFSDLETYIKEKNLQKLFEDPSRVFNADEVGFSLCPKKGKVPKGFKNVYNINMGNEKENISVLIVISAEGKIAPPLVIFPYVRPPKSLVDSVPVSWVLGRSSTGWMRSDIFFEYIANDFNAWLKRNNIERPIFLFIDGHKSHLTLAVSQICEKLGIILYALPPNTTHLLQPADVSVFYPMKVRWKDTIREWCKIPGNKNKFLTKERFCPLFEKTLASNDMGEAIKNGFRKCGLFPLNREAVDYSKCIKNMLEDLNEVPTEESFSKADLGICERVIFRLREQLNSNGIDTDLVIQIIKRYGKEVLENNDRKEKPCDNTTELLRTGDIISLDQAETFPCQVIVVDENLTHVDTDLNITQPERNISSSNHNNKTIDDLIEIIEQEYDKSEISAIMKLVKETQTSTPKNATADLDKDIEFIKKQVERHDIASIKTETEEDTKQNGTKNESIIKINRLEGRSDYIEKYERKTESSPEMIIGNENIPCVNRDHGAENVCMKNEETDVDVNELNKSNMDKIIILSDVLINKSNNSDYSSPEGYFGRHLKYPEPTSMKNKKIKDKMPSAISSLEWKNYYLKKEEMKKNKEEAIKQRKEKRRISKENRITKKKKNVKGINKFGKTQSQAVSPKELGEKIKCANCEEELISDIEEEDDKNIGCDKCPLWFHMKCTEFYGIPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00388158; iTF_00388123; iTF_00388124; iTF_00388159;
- 90% Identity
- iTF_00388158; iTF_00388123; iTF_00388124; iTF_00388159;
- 80% Identity
- -