Casp039229.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- -
- Assembly
- GCA_958507055.1
- Location
- OY293831.1:1706374-1708140[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-10 1.2e-07 32.8 0.0 2 44 16 58 15 59 0.94
Sequence Information
- Coding Sequence
- ATGCCACGAAATTACCAGCGTAAGACTGCACGGTCCTCATGGTCTGATGAAGCAATGAAAAGGGCATTAAGGGAAATAGCGGAAAATAAGATCGCCATCAGAAAAGTTTCTAGATTATACGAAATTCCATACGGTACATTACAAGATCGCCTGAGAGGTCGTTTCGAtgctaaaaaaatcacattAGGGAGAAAATCAGTGTTCACTCGAGAGCAGGAATCCGAATTTTCGACACGAATCCTAGAAATGTCAAATGCTTTTTATGGACTTACACCGCTTAATATACGTCAACTTGTTTTCGAGTATGCAGAACTAAACAAAATTCCACATCCGTTCAAAAAGGATACCGGAAAATGTGGCAAGGACTGGCTCTACTCATTCATGCGTCGACATCCAGAGCTCAGTATACGCAAACCTGAGGCGACAAGTATCAACAGAGTGACTGCTTTTAACCGcgatgagctaaaaatattttatacaaatttagcATCTCTCTATGATCGTTTTCAATTTGAGAGCCATCAAATTTTTAACGTAGATGAAACAGGGGTGAGCAGTGTCCACGTTCCTGGTAAAATTTTGACTGCAAAAGGCCGAAAACAAGTCGGAGCGATTACAAGTGGCGAGAGAGGGCAAACAGTTACCTTAGTATGCGCTGTTAGTGCATCGGGCCAATACATCCCACCAATGTTCATTTTCAAGAGGAATAGAATGAAAGAAGGTCTGGATAGAAACGGTCCTGTAGGGGCAATATACCGGTGTTCGAAGTCGGGGTGGATTACAGAAGAACTCTTCCTTGAGTGGCTGAAACActttaagaaaattgtaaattcttcCAAAGATCATCCAGTACTTCTTGTGTTAGACAATCACTCCACCCACTCGAGCCTATCTTCTTACAATTTTTGTCGAGAATCAGGAATTCACCTTGTATCACTTCCTCCACATACTTCCCATCGTCTACAGCCCTTGGACATCACCTTTTTTGGGCCCTTCAAATCAGCTTATTACCAAGAGTGTGACAAATACATGAAACACAAGAACTATGAGAGAATAAACACAACAAACATTGCAGAACTTGTCAGGAATGCTTTCAACAGGACGGCGGCTATCGAGAAAGCTGTAAATGGTTTCCAAAAGGCAGGAATATTTCCATTCAATCCTGACGTTTTTAGCGAAGAGGAGTTAATATCTTTACCAAAAGATAATGATCTTCAACCTGAAACATTTGATCCATCTAAGGGGCATCAAACACCATCTTCAATACAGGCACCGACAGAAGGAAGACCAGGTCCAAGTGGAGTAATATTCAGTCCTGCCGGTTCTAGGGAAGAGAAGTTAATACATTTGCCAAAAGGCAATGATGGTCCAGATGAAATATTTGATCCATCTGACAGGCATCAAACACCATCTCCAAGACTGCCATCACCAGAAGAAATAGGAAGACCTGGACCTAGTGGAATACTAAGTAAAAAACGTAAAATGAGATCGCCATCAACATCAAAATGCTCTTCATCAGAATCCGAGTTAGAAGTCTCAGATCTTGAGTTGAAAAACTTTGAAGATAAACTTTTAGAATCAAGAGAGAAAAAATCTGTAAACATATCCTTTAAAGAGTTATGCCCACTACCATCTTGTGGTTTCCCAAAAATGACACGCAGACGAAATCAGCATTCGTCTATCATGACATCAACACCTTTGAAAGACGATCTAGAGAATAaagaaatcaagaaaaaaaaaaaagggaaaaagaagcccaaaaagtaa
- Protein Sequence
- MPRNYQRKTARSSWSDEAMKRALREIAENKIAIRKVSRLYEIPYGTLQDRLRGRFDAKKITLGRKSVFTREQESEFSTRILEMSNAFYGLTPLNIRQLVFEYAELNKIPHPFKKDTGKCGKDWLYSFMRRHPELSIRKPEATSINRVTAFNRDELKIFYTNLASLYDRFQFESHQIFNVDETGVSSVHVPGKILTAKGRKQVGAITSGERGQTVTLVCAVSASGQYIPPMFIFKRNRMKEGLDRNGPVGAIYRCSKSGWITEELFLEWLKHFKKIVNSSKDHPVLLVLDNHSTHSSLSSYNFCRESGIHLVSLPPHTSHRLQPLDITFFGPFKSAYYQECDKYMKHKNYERINTTNIAELVRNAFNRTAAIEKAVNGFQKAGIFPFNPDVFSEEELISLPKDNDLQPETFDPSKGHQTPSSIQAPTEGRPGPSGVIFSPAGSREEKLIHLPKGNDGPDEIFDPSDRHQTPSPRLPSPEEIGRPGPSGILSKKRKMRSPSTSKCSSSESELEVSDLELKNFEDKLLESREKKSVNISFKELCPLPSCGFPKMTRRRNQHSSIMTSTPLKDDLENKEIKKKKKGKKKPKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00388009; iTF_00388013; iTF_00388010; iTF_00388012; iTF_00388011;
- 90% Identity
- iTF_00388013; iTF_00388009; iTF_00388011; iTF_00388012;
- 80% Identity
- -