Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 4.9e-09 1.3e-06 29.5 0.1 3 39 14 50 12 55 0.89

2 2 1.2 3.3e+02 2.6 0.0 1 12 174 185 174 188 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	4.9e-09	1.3e-06	29.5	0.1	3	39	14	50	12	55	0.89
2	2	1.2	3.3e+02	2.6	0.0	1	12	174	185	174	188	0.91

Coding Sequence: ATGCCGAAGAAGACAACAAAAGAGCATTTGTGGGATGAGAGGCAAATGACAGAAGCCGTCACTGCTGTTAGGACAAAAAAGATGGGATATCTTGCCGCAGCAAAAAGATATAATGTCCCTCGTGCCACGCTGTTTCGTTATGCAAAAAATTCAGGAAATCTGGAGGCCTTGAAAAAGGAGCACCTTGGACGTAAACCTGTGTTAACCAAGGAACTTGAAGATGAATTGGTCAGAAAGCCAACAGGAACTTCGGTAGCAAGAGCTACTGGATTCAAAAAAGAAAACGTGGATCACTTTTTTACTTTATTGGAAGAAGTGATGGAAGATAAAAAAATTCCTCCCGAGCGCATCTTTAATGTAGACGAAACAGGTTTGTGCATAGTGCAATCAAAGTGCCCAGAAGTTTTAGCCTTAAAAGCCGAGCTCTTCGGAAGAGCATATCTCAAGGTACAATCAGGTGAACGAGCTGTCAAAGGCTTTTCATCAACAGGCCTATATCCAGTCCGGAGAGATATTTTTACAGATGATGACTTTATAGCAGCTGTGGAGAGCGTTGGTGAAAACCATCCTGCAATAGAAAATAACAATCCCACAGATCAACAGAAGATTTCCAATATTTCTGTTTATCCAGCCGTTGAAGACATTGAAACAGCTACaaccaaaccaaaaaagcagcaGAGTCGAAAAAAGCCGAGTCAGAAACAAAGATCCGAGATAGAACCCTACAAATCAAAGGACATTTCAAGTTCGAGTCTCTACGACGATCCTGGTCCAAGTTCGAGCAAGCAAATGAAAGGGAAAAATCCTTTCCAAAGAGACACTTCGCCTACCAGCTCCGAGGAATCTAAACTTTCCTTCCAGGACTCAACTGACGAGGAAATGTCATCAGTTTCTGTAAATCCGGCTCCAGATGCTGTGTGTATTTTCTGCGAGGGAAAATTCTCCAGTGATCATGGTGGAGAAATTTGGGTGATGTGCATTAGGTGCGAGATGTGGTCACACGAAGAATGTGCCGGAGTTGAAAAGGAGATTTACATTTgtgatttttgtaaataa
Protein Sequence: MPKKTTKEHLWDERQMTEAVTAVRTKKMGYLAAAKRYNVPRATLFRYAKNSGNLEALKKEHLGRKPVLTKELEDELVRKPTGTSVARATGFKKENVDHFFTLLEEVMEDKKIPPERIFNVDETGLCIVQSKCPEVLALKAELFGRAYLKVQSGERAVKGFSSTGLYPVRRDIFTDDDFIAAVESVGENHPAIENNNPTDQQKISNISVYPAVEDIETATTKPKKQQSRKKPSQKQRSEIEPYKSKDISSSSLYDDPGPSSSKQMKGKNPFQRDTSPTSSEESKLSFQDSTDEEMSSVSVNPAPDAVCIFCEGKFSSDHGGEIWVMCIRCEMWSHEECAGVEKEIYICDFCK

Sequence clustering based on sequence similarity using MMseqs2