Casp039800.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- -
- Assembly
- GCA_958507055.1
- Location
- OY293831.1:9399674-9406027[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.7e-06 0.002 19.3 0.0 5 39 1 35 1 39 0.93 2 2 3.6e-05 0.0096 17.1 0.0 2 39 130 167 129 172 0.92
Sequence Information
- Coding Sequence
- ATGATAAGCGCTGTTAAAGCGGTAAGGAACAAGGAGATGAGGTACCTGATGGCCTCTAAAACATTCAATGTTCCGAAAGgtacCATTGAACGATATGTAAAAGATAACAGACGAGCAGAGGACCTCGTAAAAATAGCTTTGGGTAGGAAACAAGCTCTACCTGATGTTttggagaagaagaagaagactaaAAGTACCGAAAAAGCTGAAATAACATCGAGCAGCTCAGATTCAGAAACTTCTGTGCATTATGATGACTCGACTGATGAAGAGGATTACAATGACGCAGAGAGTCGTTTTTGTCAGGGAAGATTTTCCGAAGACACCCGTGGAGAAAAGTGGGCTAGATATATCCATCGGGAACAGGTACAACAGCATAAGTGGAATGAAACTGATATGGCTTGTGCATTCGAAGCAGCCCGAACTAAGAAAATGGGCTGGAAATTGGCTCCTGCTACATTCAACGTACCCAAAACTACTCTGCGCCGTAGGCTGCATTCTAGCATGGGCAGCACAAAAGTGTATTTAGAAGGAATCTATCTCTTCAACCCCGATTTATTTGAGGAGTGGCGACTGAAGCGACTGAAACAAACGCTTCTGCAAGTCGTCCAGCAGTATCCCAAGAATGTGGAAATGTTGTTGAAGATGTGGAATCCACAACTGTTATGCAACAAGAGATTCAATTCTGGAATTCTCTCCTATCCCATAAGAATTTCCAAGAGAAAGCGATAA
- Protein Sequence
- MISAVKAVRNKEMRYLMASKTFNVPKGTIERYVKDNRRAEDLVKIALGRKQALPDVLEKKKKTKSTEKAEITSSSSDSETSVHYDDSTDEEDYNDAESRFCQGRFSEDTRGEKWARYIHREQVQQHKWNETDMACAFEAARTKKMGWKLAPATFNVPKTTLRRRLHSSMGSTKVYLEGIYLFNPDLFEEWRLKRLKQTLLQVVQQYPKNVEMLLKMWNPQLLCNKRFNSGILSYPIRISKRKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -