Casp039799.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- -
- Assembly
- GCA_958507055.1
- Location
- OY293831.1:9388476-9397092[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-06 0.00064 20.9 0.0 4 39 42 77 39 81 0.93 2 2 5.1e-05 0.013 16.7 0.0 2 39 172 209 171 214 0.92
Sequence Information
- Coding Sequence
- ATGGACGTCAATGGTGCACTAATAGTCACTGAATCAGATGGAACTCGTATCGAAGAAGACGAGGTGTTCGAGGTTCTAGATGCTACTGAGCCACTGCTATTGTTGAAGCAGTGGGATAAAAATGCCATGATAAGCGCTGTTAAAGCGGTAAGGAACAAGGAGATGAGGTACCTGATGGCCTCTAAAACATTCAATGTTCCGAAAGgtacCATTGAACGATATGTAAAAGATAACAGACGAGCAGAGGACCTCGTAAAAATAGCTTTGGGTAGGAAACAAGCTCTACCTGATGTTttggagaagaagaagaagactaaAAGTACCGAAAAAGCTGAAATAACATCGAGCAGCTCAGATTCAGAAACTTCTGTGCATTATGATGACTCGACTGATGAAGAGGATTACAATGACGCAGAGAGTCGTTTTTGTCAGGGAAGATTTTCCGAAGACACCCGTGGAGAAAAGTGGGCTAGATATATCCATCGGGAACAGGTACAACAGCATAAGTGGAATGAAACTGATATGGCTTGTGCATTCGAAGCAGCCCGAACTAAGAAAATGGGCTGGAAATTGGCTCCTGCTACATTCAACGTACCCAAAACTACTCTGCGCCGTAGGCTGCATTCTAGCATGGGCAGCACAAAAGTGTATTTAGAAGGAGAACATAAAGGCCTTACTCTCCTTATTCGCGAGAATTTGGACAAGTCCATTTCCCACCATAATGTGGTTGAAAATGGAATGAGTACAGTTCCTACAATAACTCAGAAGGTAGTAGCTATAGAAGGAAGAAGACAAATTGGTAGTCTGAGTAGTGCAAAGCGTGGCCATCATTCAATAGCTGTCTGCTGTATGAATGCGATACCTTTGTACCCCCAGCATTTATTTTTCCACGCAAAAGATTTAAAGCTGAGCTGA
- Protein Sequence
- MDVNGALIVTESDGTRIEEDEVFEVLDATEPLLLLKQWDKNAMISAVKAVRNKEMRYLMASKTFNVPKGTIERYVKDNRRAEDLVKIALGRKQALPDVLEKKKKTKSTEKAEITSSSSDSETSVHYDDSTDEEDYNDAESRFCQGRFSEDTRGEKWARYIHREQVQQHKWNETDMACAFEAARTKKMGWKLAPATFNVPKTTLRRRLHSSMGSTKVYLEGEHKGLTLLIRENLDKSISHHNVVENGMSTVPTITQKVVAIEGRRQIGSLSSAKRGHHSIAVCCMNAIPLYPQHLFFHAKDLKLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -