Casp036508.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- -
- Assembly
- GCA_958507055.1
- Location
- OY293830.1:30512209-30521126[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-10 4.4e-08 34.2 0.0 1 39 301 340 301 344 0.90 2 4 9.2e-12 2.4e-09 38.3 0.1 1 39 355 393 355 396 0.95 3 4 9.4e-18 2.5e-15 57.4 0.0 1 45 410 455 410 455 0.98 4 4 1.1e-15 3e-13 50.8 0.0 1 40 462 502 462 506 0.92
Sequence Information
- Coding Sequence
- ATGAATCGTACATGCACcTCGCTGCTACGAACGGCGGACCAATTAAAGATCAAAGGACTGTGCGAATCGCCCGACGACAAGGAAAATTCCAATTTGCCTCTGCCCCTATTTTGTAGAAGCGACGAGTTGTCAACGTCGCCCAAACGATTCAAGACGAGCAGTCCGAAATCGAAACAACGGAAGGCAAGCAACAGCGAAGGCGAAAAACCACCATCGGATGAAAACGCACCACCAAGACAGGTGGAGCAGCAGCAAGAGGCTAACAACGAAGCAGAGATCAGAGAGGGCAGTGAGAAGGAAGACAGGCCGAACGAAGAGCATGACATGCCAGTAGCCCTGGATGAACGAAAGAGAAAGAGGGCAGGCCCACAGCAGCCAGAGCAGACGAAACCACTAAACATGAGCAGTCATGGACTTATCTCAGGGCAGACGATCTTCTCCCAGTTTGGAGTTGATACAGATGATTTTCCACCTGAACCACCTGCTCCCTCGGCAATACCTGTCGGCCATGTAGATATGCCAGATCATTCGCCAAGTCGTGTCCTTTTAGGAAGCACCGCCCCCATACATCGGACGGACATCTCGGACTCGACAACCAACAAGTTTATCTTGCAggaCATCAAAAAAGAAGCTGCCGATATAAAGTTCGAAGTGCTGCGATCTTATGATCAAGACAACAGCTTATTAGACATGGAATCTCATATGTCGGGTGGAAATGAACATTCCATGGATAGTCACGATGACTCAGACGTTCTTCATCATCATATGATGGATTTCAGTGTGCCAGGAATGTCCAATAGATTAGATTTAAAAAGTGATGATCAAGTACCTGGTAAACATAATGGCCATACAGAAAACATGCATCACAGTCAAAGACATGGCGGAGGCCCTAAAACATGGACCCAAGAAGACATGGAAATGGCTTTGGATGCCTTACGAAATCACAATATGAGTCTTACAAAGGCTTCAGCAACTTATGGAATTCCCTCCACTACTTTATGGCAAAGAGCTCATAGATTAGGCATAGATACACCTAAGAAAGAAGGTCCAACCAAATCGTGGACCGAAGAAAATCTCAACAGTGCCCTTGACGCCTTACGAACTGGTACCATTTCAGCTAATAAGGCTAGTAAAGCATACGGTATACCTAGCAGCACCCTGTACAAAATAGCGAGACGAGAAGGAATAAGACTGGCTGCACCATTTAATGCCGCACCGACAACATGGACACCTGAAGATCTGGAGAAAGCATTGGAATCAATCAGAACTGGTCAAACATCCGTACAGAAGGCATCAACAGAATTCGGAATACCCACAGGTACACTCTATGGCAGGTGTAAGCGTGAAGGCATCGAATTATCGAGATCTAATCCGACACCATGGTCAGAGGACGCGATGGGTGAAGCACTGGAAGCAGTTAGGTTAGGACATATGTCAATCAACCAAGCTGCCATCCACTACAACCTGCCTTATTCATCACTGTATGGGCGATTCAAACGTGGAATCAAATATGAAACTGACAACTTGGATTTGAGTCAAGATAGTCAGTCCCAATTGGATCCACATGCCTTTACAATGGAATACGCCGCTCATCCACAGattcaatatcaaaatcagagcagcTGA
- Protein Sequence
- MNRTCTSLLRTADQLKIKGLCESPDDKENSNLPLPLFCRSDELSTSPKRFKTSSPKSKQRKASNSEGEKPPSDENAPPRQVEQQQEANNEAEIREGSEKEDRPNEEHDMPVALDERKRKRAGPQQPEQTKPLNMSSHGLISGQTIFSQFGVDTDDFPPEPPAPSAIPVGHVDMPDHSPSRVLLGSTAPIHRTDISDSTTNKFILQDIKKEAADIKFEVLRSYDQDNSLLDMESHMSGGNEHSMDSHDDSDVLHHHMMDFSVPGMSNRLDLKSDDQVPGKHNGHTENMHHSQRHGGGPKTWTQEDMEMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALDALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYETDNLDLSQDSQSQLDPHAFTMEYAAHPQIQYQNQSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -