Caur017230.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- -
- Assembly
- GCA_949320105.2
- Location
- OX439474.1:30452483-30468318[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.038 4.8 9.0 0.2 2 23 306 328 305 328 0.89 2 17 0.0075 0.95 11.2 0.4 2 23 386 408 385 408 0.95 3 17 0.88 1.1e+02 4.7 0.6 1 20 414 433 414 435 0.94 4 17 5.9 7.4e+02 2.1 0.1 1 23 446 468 446 468 0.91 5 17 0.00065 0.082 14.5 4.6 1 23 526 549 526 549 0.96 6 17 0.035 4.4 9.1 2.8 2 23 556 578 555 578 0.95 7 17 0.0013 0.16 13.6 2.5 1 21 679 699 679 700 0.95 8 17 0.0021 0.27 12.9 1.4 2 23 712 734 711 734 0.92 9 17 3.8 4.7e+02 2.7 1.2 1 23 737 760 737 760 0.94 10 17 0.1 13 7.6 0.6 3 23 767 787 765 787 0.96 11 17 0.21 26 6.6 0.5 1 23 791 814 791 814 0.96 12 17 0.14 18 7.1 0.5 2 23 821 843 820 843 0.94 13 17 0.087 11 7.8 0.7 2 23 852 874 851 874 0.95 14 17 3.5 4.3e+02 2.8 0.3 3 19 881 897 880 898 0.97 15 17 3.1 3.9e+02 2.9 2.6 2 23 1037 1059 1036 1059 0.94 16 17 0.16 20 7.0 0.5 2 23 1066 1088 1065 1088 0.94 17 17 0.15 19 7.1 1.0 1 23 1101 1123 1101 1123 0.96
Sequence Information
- Coding Sequence
- ATGGAAACGAAGTTGTGCCGAATTTGTGGAAAGCTCGGACAAAACTTTGTACATATTTTCAAAACGGAAGGACTGAGGAGCAAAATCGAGACATGTCTGCCGATAATTgtGACTCCTTATTGCCTTCTTCCCGACACAATATGCGGAGAGTGTACGGAAAACGTAGACAATTTCTACATGTTCATAAAAAACTGTTTACAGAACATCATCATACTCGAAGCACAATACGACATTCAGGAATCCTGCTTGAAATCCAaacaaaaaaaagacaaaagctGCTTTGCcgattttaaacataaaaaaaccaataaaggaAATCAAACCGATGATTATTTGGATGTATTAAGCGGGAGAAACGTGGATATTGAAAGTCTGAGGAAGAATTTTCCGCTTAGCGTAAATTTTTTGGACAATCAGGACGATTTAGTACGAAAAAACGATGCTAGATTAGTCGATTATGATGTAGATTCGGATTCGAGCTTAGAAGACTATTTCCAAAACAAAGGTGAAGTTATTTTAAGCGAGCGACTACaaactaaatttcaaatatcACATTTAGTAAACTCTTTCACGACGAAAAACGTTCTTCCTACAAAAACCCAGTATTTCGATGATACTGAGAAGAATTTGATTAGCGAGATTTCccaaagaaaaaatttaaaaagaaaaaacgaaTTTATCGAAACTTCCAAGCCAAAAATTTACAGGGTGGATACGTCGAATAGGAGAAAAAATAAAGTACCAAAGAAACTAGATACTCAAGATGTTGGCGAGGAAACTGTCGGTTTCGGAATTGTTGAAAAACCGCTCAAAATGGATGCTGAGGTGCAAAATAAGGATGGTGTTAACGGGGAGGCCGAAACCTTACAGAATCTTAATAAccaaAATGAGAAGCTGTTGCTATCCTTACCACAAAGCTGTCTATTATGTGATACTCACTTTTCTGGTCCTTCCGCTCTCGCTACGCACGTTTTTGAAGCCCACGGTATTGACATGGCCGAGGTCGTGTCGTCGGGCTCCGGAGAATCTTTCCCAGAGAAGAACAAGAAAAAGTTACCGAACCTAGTGAAAATTTCTGATCTCAAAAAGACTGACTCTTTAGACGATAATCACTCTTCTGATAGACAACTAGAATCCACAAAACCATCTGGGCTTTCTTGCCCTAATTGTTCTGGCATCTTTACCAGTAAACAAGATCTGATGATGCACCTTAAACTGAAACACGCACAACTAGCAGGTTTCGTATGCGGCATTTGCTTAAATCAATGCTCATCTTTGATGAATTTAAAATCTCACTTGGAATTCTGTACGCAACAGAACCCAGTTAACACAAAATATGTCTGCCAGGTGTGCCAATACGGGGACGATAATTTTAAATGGCTGGAAAACCATGTTTTGGTCCACGAATTTTTACAGGAAGCCTGTAAGAAGCAAATGAGAATGTTCGATCCTGAAGATTACATTGACATTAACGAAAATACTTGTTACAAAGGTTTGAGTTGTGCAGAATGCGATTTAGATGAGTTTTTCTCGTTCAAGGAATTCAGCGCTCATAGAAGAAACAAGCACAACATCTTCCATTGTGATCTCTGTAACAAATTTTACGGGAGAAACTCCCATCTATGGAAACATGTTAACAGGCTTCATAAGGGACATCCTAGCATTACCTGTCAACTCTGTTATAAAACATCTGCTTCTAAATACCATCTCTCACAACACTTTAACAAAATTCATCTTGCAAAAGGCGGCAAAAAATCCTGTAGTACGGAATTAGTCgagaaagaaaataaagaagacTCTTCCAACAAATTTTCCGCATTTGACTTCTTGTCGATCAGGGAGAATTTCTTGAAGCAAGAACTGGTGGAGAATAGCGATGATATTTCCGACGATGAATTAGTCATTAAAGAAGAATACGATGAAGATTCTACTATTAAGGAAGAACATCCGTTAGCCCCGAAGGAAATTGATTCTTCTCACGACATGTACAACAATATCATAACCAATTACACTCCTCCATTGAATGAAGGCGATTTTAAATGCCCCAAATGTTCCAAAGGCTTCAATAAGAAACTCTTATTAAAGAAGCACAAGAAGAATTGCAGACCCAGGATGCAGAAAGATTTATTGACTAGATGCAAGACTTGCTCTAGAATTTTCAAAGATCGGCAGAGTTTAGCCAAACATCTGGTCAACTACCACTCAGAATACAGCTGTGAAATATGCTTAGAGAAAGTCCAAAGTAAATGCGAGATAGTCTCTCATATTAGATTCAGGCATCCTGGTTGTCCGCTATTCTGTAGGATATGCAAAAATATCCTGCGTTCTAAGGGTGATATGCAGGAACATATCAGGAATCACTTCGATTCCCACGTTTGTCAGTTTTGCGGGGATTCCCTACCCAGcaagatcaaattaaaaatgcatataTTGAGCTTACATCGGAAGATATTGAGTCTATCTTGCGGAATTTGTTTGAAACTCTTTGAGAACCAACACGTGTTGAGGGATCACGTCAAACTTGTGCATAAAGATCAGTTGGCTCCTCATACATCTTGCTCCGTTTGTGGCAAAAATTACGGCTCCAAATGGAAAACTTACGACCATATCAATAAGTCTCACGGGAGGATATTTAGAGCTTGCAAGACTTGTTTGGAGATATTCGATAATGACGCTCAGCTTCAAGCGCATTGTGATGTTACCGCTCACGGTGGGCAGATCGGTAACGCTAATGCTGCGGCTTTGAGAAACAGTATTATGGCCCACATTAAATCTGCTCTAATCATCAATAACGAAGAAGATAGCATGACCGATGACGACGGGAATACTGATAGCGAATTCGAAAATGAATCAGTACCGTATGAGGAAGACAGAAATTTCTTTTTTCCTTCCCAAGATGAGGCTAAAATATCGCTGTTAGAAAAACGCTTACTAGGCAAAACTTTAACTGATGAAGAAACCAGTGTTAAACCCAAAATAACTGTTACCAAAAAACCCAAATCATCCAAAAGCAACAAACAAATAGTTGCTGTAAAGAAAGAAGATCCTGAACATTCTCAAACGAACTCCTCTAAACGTACTGTATATGTAAACAGCAACGATCCTTCTTACTGCGAAATCTGCTACAAAACATGGCCGGCTAAAAAGCATCTCTGGCAACATTACATCCGTTGCCATAAAAGCATCGCTGCCACAGTATGCGGGATATGCCTGAAGACTAACAAAGACTATGAAACACTGCAAAAACATCTGCGAGATACTCACCCTAAACTATTACACGGTCAAGGCTTCGGGTCGAATTTTATCTGCAAGATATGCGGCAGATATCACAACGCTAGTTCGAAATTGAGACTCCACATGGTCATACATGAGAACTTCGACTGGAAGCTGATAGAGGATGCTGATAAAGACGTTAAACCTTCCACTAATGGTTTCAAGGTTAAAGAGGAGCCTCAGTATGAGGATATCAACTATGAAAGTTTGATAGAGCAAGTAGAGTGTTCGTCGGAAACTGAGAATGAGGAGTCTGGTGATGAGAGACAAGTGAAGCAAGAGAATTCTTCATCTTCGGATGAGGATGGGGGAGATGTGAGTGAAGAGGATTCCGGGCAAAGCTGGgaTCAAAAGGAAGAAAAAACTGAACTTCCCACACAAGACCCTCCTCAACAACGCCAACAGTATTCCTCTTCCAGCGAAGATTCCACCTCGAGTTTCTGCAGAAGCAAATGTAGTTCTTCGGAAGACGATTGCTCTCGGGAATCCAGATCAATGTCTTCGCATTGCAAGAACAAATCCGAATCGTTTCATCAGAGATCTAACTCTGAAACTGTTGATGATGTTCTTACTCCTGCAAACAACCCGAGCATGTTTGTGAGGAAACCCGAAGAACTGGACTCCGCCATCAAATCTATAAGTTATGATGAATGCATTGAACCGGAGGATCTCAACGTTGTTGACGATTATTGCGATTTGCAAAGTAATTGTCTGAACGAGAATGAAATTGAATCGGCAGTCGGTAGCATACTTTAA
- Protein Sequence
- METKLCRICGKLGQNFVHIFKTEGLRSKIETCLPIIVTPYCLLPDTICGECTENVDNFYMFIKNCLQNIIILEAQYDIQESCLKSKQKKDKSCFADFKHKKTNKGNQTDDYLDVLSGRNVDIESLRKNFPLSVNFLDNQDDLVRKNDARLVDYDVDSDSSLEDYFQNKGEVILSERLQTKFQISHLVNSFTTKNVLPTKTQYFDDTEKNLISEISQRKNLKRKNEFIETSKPKIYRVDTSNRRKNKVPKKLDTQDVGEETVGFGIVEKPLKMDAEVQNKDGVNGEAETLQNLNNQNEKLLLSLPQSCLLCDTHFSGPSALATHVFEAHGIDMAEVVSSGSGESFPEKNKKKLPNLVKISDLKKTDSLDDNHSSDRQLESTKPSGLSCPNCSGIFTSKQDLMMHLKLKHAQLAGFVCGICLNQCSSLMNLKSHLEFCTQQNPVNTKYVCQVCQYGDDNFKWLENHVLVHEFLQEACKKQMRMFDPEDYIDINENTCYKGLSCAECDLDEFFSFKEFSAHRRNKHNIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQLCYKTSASKYHLSQHFNKIHLAKGGKKSCSTELVEKENKEDSSNKFSAFDFLSIRENFLKQELVENSDDISDDELVIKEEYDEDSTIKEEHPLAPKEIDSSHDMYNNIITNYTPPLNEGDFKCPKCSKGFNKKLLLKKHKKNCRPRMQKDLLTRCKTCSRIFKDRQSLAKHLVNYHSEYSCEICLEKVQSKCEIVSHIRFRHPGCPLFCRICKNILRSKGDMQEHIRNHFDSHVCQFCGDSLPSKIKLKMHILSLHRKILSLSCGICLKLFENQHVLRDHVKLVHKDQLAPHTSCSVCGKNYGSKWKTYDHINKSHGRIFRACKTCLEIFDNDAQLQAHCDVTAHGGQIGNANAAALRNSIMAHIKSALIINNEEDSMTDDDGNTDSEFENESVPYEEDRNFFFPSQDEAKISLLEKRLLGKTLTDEETSVKPKITVTKKPKSSKSNKQIVAVKKEDPEHSQTNSSKRTVYVNSNDPSYCEICYKTWPAKKHLWQHYIRCHKSIAATVCGICLKTNKDYETLQKHLRDTHPKLLHGQGFGSNFICKICGRYHNASSKLRLHMVIHENFDWKLIEDADKDVKPSTNGFKVKEEPQYEDINYESLIEQVECSSETENEESGDERQVKQENSSSSDEDGGDVSEEDSGQSWDQKEEKTELPTQDPPQQRQQYSSSSEDSTSSFCRSKCSSSEDDCSRESRSMSSHCKNKSESFHQRSNSETVDDVLTPANNPSMFVRKPEELDSAIKSISYDECIEPEDLNVVDDYCDLQSNCLNENEIESAVGSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01047846;
- 90% Identity
- -
- 80% Identity
- -