Caur002575.2
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- ush
- Assembly
- GCA_949320105.2
- Location
- OX439472.1:18290219-18297793[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00067 0.084 14.5 0.1 1 20 150 169 150 171 0.95 2 9 0.00015 0.018 16.6 3.3 1 23 215 237 215 237 0.99 3 9 0.011 1.4 10.7 0.7 3 20 266 283 265 285 0.93 4 9 0.041 5.1 8.9 2.7 2 21 564 583 563 584 0.93 5 9 0.005 0.63 11.7 0.0 3 20 623 640 621 642 0.91 6 9 0.4 50 5.7 0.1 2 23 679 700 678 700 0.95 7 9 0.0085 1.1 11.0 1.3 1 23 706 728 706 728 0.99 8 9 0.16 20 7.0 2.1 1 23 781 804 781 804 0.95 9 9 0.62 78 5.1 1.0 2 21 884 903 883 904 0.93
Sequence Information
- Coding Sequence
- ATGTTTCCAAGTACACCAATACAACTATTGATAATTGCGTTTTTTGTTGCAGGGGAGGTAGAAGATTGGAACAGCGACCCGGCTGAAAACGCCGCTTCCGCGAATTCATCTTCCAAGTCGCCTCCGCCCAAGAATACCACTCCCGAAGAGACCGTTGAAGACAATACGCAGAGCTTGCAGAAGAATGAAGTCGAAGAAAAGACGCCGAGGATTCGGTTAAAAGCCAATCTAGCAACTGATCCGGCACTGCAATCTCAAACAATCACACTCACAAATGCAAAGATTGAATCCGAAACAAATCCATTTCCCCCTAGTTATCTATCATCTCTACCGCCCGCTATACAAAGCACTTTAGTCTCTAGAGGCTTCTTTCTTCCAAATATTCTTCCCGCGACGGATCCTCATCAAACTGAATCCCTAGAAACCAGGCAGCCAACTGTACCTATATTTCAATGTCCCCCTTGTGGAATAAGATTCTCTTCCCTTAGCACTCTAGAAGCACATCAAACGTACTATTGTTCGCATCGTGCTAATAAAACTTTAAACGATGATGACTCGAAATCAGTTACCGATCCAAATGGAAGTCAATCAGATGCAGACCCATCAGAACCTCCATTAAAGAATTTTCGTAGCGGTAAACAATACACCTGCACTCACTGCTCATATAGTGCTGATAAGAAAGTTAGTTTAAATCGTCATATGCGAATGCATACAGTGTCTCCTAGTCCTAGTCCCTTGAATATTGTAACAACTCCAAATGGAGAAAGTGGCGGCGCCAGCAATCCAGACCGATACTGTGCCGAATGCGATATTAGGTTCAGTTCACAAAAAACATATCGTGCTCACAAGTTGCATTACTGCAATTCCAGACACTTAGTCAAGCTACCATCAGCGCCCACCACAAAAGCGTCATCTAGTACTTCTGGTTCATCACCGACTTCTCCTGTAGATAATAGACCTTGTAGAACACCTCCATCACCTACGTCGCAAGGTGCTTCGCAACAACCCTTCTTGGCTCTACCAACCAATCCCATTATTATTGTGCCATATTCTCTGTTTCGAAATGCAAGTGTTTTACCAGCCTTGTCTGCTGCTTCGGGACTTCCCACTCCAGATACACCTTGTTTTCTTCTTCCAAATGGCACTTTACAACCAATGTCTAGTGCTTTAGCCAATCAACTGAGTCAACAAGGTGAAACGCATAGAAATGAAAAATCCAAAGAACCTCCTATTATCCGCGAATCTTCTTCTGCACCTTTAGACTTAAGTATGAGGAAATCCCTAGAAAATAATGATCTGATTATCGATTTTGGCGAAGATCAGGAAAGAAGTACTCCTAATCAATCGGTTAGTCCAGAGAAAAGTAAATCAGTACCTTCTTCCCAAAATTCGCCGCCAACAACTCCTGTCTCGCACTGCGAATCGTCACGGTCGCCTAAAATAAAAGATGAAGCATCGAGAAGCAGTAGCCCAAAGAGGTTAAGATCTGTTTTAAAATCCACGCAAAATGCTGACAATAAGAGAACAAGTCCCGAAATCAACAATTTCCagcaatttgaaaataatccaTCCTTGCATCCTTTGTTAATGCGGGGATCTTTACCGCTACTCGCTCCTGAGGTTCAGTTGAGATTAGAACCGCCATTACCAGCGGTTATGCCGCAAGTTTTAGTCAAACAAGGAGTATCAAAATGTAAAGACTGCAACATAGTGTTTTGCAAGCTAGAAAACTACGTTATCCACAAGAAACACTATTGTTCTGCTAGAACGCAAGACGAGAATCTTTCGAAATTTTCTGGTAGCCCGCCTGTAAGTCCAAGCAGTATCGAAGCAACCAGTCCTGCGGGACAATACCAACAACTTATTTGTCTAGCATGTGGAATAAAGTTTACTTCTTTGGACAACCTCAACGCCCACCAAGCTTATTACTGTCTGAAAAGAGGAGACGCGACGGACGTGAGAAAATGCGGAAAATGCAAGGGGATAGCCGAACCGGGCCACCAGTGCGTCCCGCACGCGGCTCTCTCGGGATGGAAGTGCCCTTGTTGTGACGTCATTAGCCCTACGGCGAGTGCAGCTCAAAGACATATGGAATCTCACACCGGAGTCAAGGCCTACAGATGCACCATATGTCGCTATAAGGGAAACACGTTAAGGGGAATGAGAACGCATATCCGAATGCACTTCGATAAGCGATCTTCAGATTTGCAGGAAGAAAAGTACATCTCCTATATATTGGAAGATGAAGGCTCAAACACGGTAGAAGTAAATGTAACTTCAGCGGACTCATCGGAAGAAAAAACCGGTTCTCCAGTTACCGATTCCTCTTCTGATCCCTTACACTACTGCCTTCAGTGCTCGTACAACTCCAACTACAAAGCCAACGTTCTCCGACACATGAAATTAGTCCACGATGTTTCATTGAACGAAGAAGTAGTAGCTAACGGACTATCAGATAAAAACAAGTCCATGCCCGTGTTAGAGGAAGATGAAGAGATATTGGTGAAAAGAGAAGCAATAGAACCTGAGGTGATCATCGCCCAAGGCGACGAACCCATCATCAAAGAAGAACCGGATGTACCCAAAGCTCCTAAGAGCAAAACACCCGATGAAGAGATACTCCAAGAAGCCGCCAAATCGGGGTCTAAGTATTGCAAATCTTGCGACATCTACTTTAACTATTACTCAACTTTTGTGGCGCATAAAAAGTTCTATTGCTCTAGCCACGCCGGGGAGATTGCGAATGCGGCCTcgaataataatattaacaataaTTCAGCAACACGTACTGCTGAGGCATCTGTGCTTTAA
- Protein Sequence
- MFPSTPIQLLIIAFFVAGEVEDWNSDPAENAASANSSSKSPPPKNTTPEETVEDNTQSLQKNEVEEKTPRIRLKANLATDPALQSQTITLTNAKIESETNPFPPSYLSSLPPAIQSTLVSRGFFLPNILPATDPHQTESLETRQPTVPIFQCPPCGIRFSSLSTLEAHQTYYCSHRANKTLNDDDSKSVTDPNGSQSDADPSEPPLKNFRSGKQYTCTHCSYSADKKVSLNRHMRMHTVSPSPSPLNIVTTPNGESGGASNPDRYCAECDIRFSSQKTYRAHKLHYCNSRHLVKLPSAPTTKASSSTSGSSPTSPVDNRPCRTPPSPTSQGASQQPFLALPTNPIIIVPYSLFRNASVLPALSAASGLPTPDTPCFLLPNGTLQPMSSALANQLSQQGETHRNEKSKEPPIIRESSSAPLDLSMRKSLENNDLIIDFGEDQERSTPNQSVSPEKSKSVPSSQNSPPTTPVSHCESSRSPKIKDEASRSSSPKRLRSVLKSTQNADNKRTSPEINNFQQFENNPSLHPLLMRGSLPLLAPEVQLRLEPPLPAVMPQVLVKQGVSKCKDCNIVFCKLENYVIHKKHYCSARTQDENLSKFSGSPPVSPSSIEATSPAGQYQQLICLACGIKFTSLDNLNAHQAYYCLKRGDATDVRKCGKCKGIAEPGHQCVPHAALSGWKCPCCDVISPTASAAQRHMESHTGVKAYRCTICRYKGNTLRGMRTHIRMHFDKRSSDLQEEKYISYILEDEGSNTVEVNVTSADSSEEKTGSPVTDSSSDPLHYCLQCSYNSNYKANVLRHMKLVHDVSLNEEVVANGLSDKNKSMPVLEEDEEILVKREAIEPEVIIAQGDEPIIKEEPDVPKAPKSKTPDEEILQEAAKSGSKYCKSCDIYFNYYSTFVAHKKFYCSSHAGEIANAASNNNINNNSATRTAEASVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057277; iTF_01047813; iTF_00026408; iTF_00792560;
- 90% Identity
- iTF_01047813;
- 80% Identity
- -