Basic Information

Insect: Crepidodera aurea
Gene Symbol: -
Assembly: GCA_949320105.2
Location: OX439472.1:62314752-62318255[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.44 55 5.6 0.5 1 21 2 22 2 25 0.78

2 27 0.0031 0.39 12.4 1.3 1 23 72 95 72 95 0.93

3 27 0.14 18 7.1 0.9 3 23 116 137 115 137 0.91

4 27 0.012 1.5 10.5 0.4 2 23 147 169 146 169 0.90

5 27 0.041 5.1 8.9 1.3 3 23 175 196 173 196 0.92

6 27 0.01 1.3 10.8 0.9 2 23 211 233 210 233 0.90

7 27 1.4 1.8e+02 4.0 0.5 1 23 238 261 238 261 0.92

8 27 0.59 74 5.2 0.5 1 23 286 309 286 309 0.93

9 27 6.8 8.6e+02 1.9 0.4 1 23 334 357 334 357 0.89

10 27 0.57 71 5.3 0.9 1 23 382 405 382 405 0.93

11 27 1 1.3e+02 4.4 0.3 1 23 430 453 430 453 0.92

12 27 6.8 8.6e+02 1.9 0.4 1 23 478 501 478 501 0.89

13 27 0.23 28 6.5 1.2 2 23 514 536 513 536 0.92

14 27 0.012 1.5 10.6 1.7 1 23 541 564 541 564 0.97

15 27 0.032 4.1 9.2 0.4 2 21 578 597 577 598 0.93

16 27 1.9 2.4e+02 3.6 3.2 3 23 627 648 626 649 0.97

17 27 0.007 0.88 11.3 0.6 2 21 669 688 668 689 0.94

18 27 0.2 25 6.7 3.2 3 23 694 717 692 717 0.87

19 27 0.002 0.25 13.0 0.5 1 23 723 746 723 746 0.97

20 27 0.0005 0.062 14.9 2.4 2 23 749 771 748 771 0.96

21 27 1.6 2e+02 3.9 0.4 1 23 777 800 777 800 0.93

22 27 0.019 2.3 9.9 1.5 2 22 803 823 802 825 0.89

23 27 6.2 7.8e+02 2.0 0.1 1 14 831 844 831 854 0.77

24 27 0.0031 0.38 12.4 1.2 2 23 857 879 856 879 0.92

25 27 0.021 2.7 9.7 0.4 2 22 897 917 896 919 0.88

26 27 0.053 6.7 8.5 2.6 1 23 925 948 925 948 0.96

27 27 0.55 69 5.3 2.0 1 23 969 992 969 992 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.44	55	5.6	0.5	1	21	2	22	2	25	0.78
2	27	0.0031	0.39	12.4	1.3	1	23	72	95	72	95	0.93
3	27	0.14	18	7.1	0.9	3	23	116	137	115	137	0.91
4	27	0.012	1.5	10.5	0.4	2	23	147	169	146	169	0.90
5	27	0.041	5.1	8.9	1.3	3	23	175	196	173	196	0.92
6	27	0.01	1.3	10.8	0.9	2	23	211	233	210	233	0.90
7	27	1.4	1.8e+02	4.0	0.5	1	23	238	261	238	261	0.92
8	27	0.59	74	5.2	0.5	1	23	286	309	286	309	0.93
9	27	6.8	8.6e+02	1.9	0.4	1	23	334	357	334	357	0.89
10	27	0.57	71	5.3	0.9	1	23	382	405	382	405	0.93
11	27	1	1.3e+02	4.4	0.3	1	23	430	453	430	453	0.92
12	27	6.8	8.6e+02	1.9	0.4	1	23	478	501	478	501	0.89
13	27	0.23	28	6.5	1.2	2	23	514	536	513	536	0.92
14	27	0.012	1.5	10.6	1.7	1	23	541	564	541	564	0.97
15	27	0.032	4.1	9.2	0.4	2	21	578	597	577	598	0.93
16	27	1.9	2.4e+02	3.6	3.2	3	23	627	648	626	649	0.97
17	27	0.007	0.88	11.3	0.6	2	21	669	688	668	689	0.94
18	27	0.2	25	6.7	3.2	3	23	694	717	692	717	0.87
19	27	0.002	0.25	13.0	0.5	1	23	723	746	723	746	0.97
20	27	0.0005	0.062	14.9	2.4	2	23	749	771	748	771	0.96
21	27	1.6	2e+02	3.9	0.4	1	23	777	800	777	800	0.93
22	27	0.019	2.3	9.9	1.5	2	22	803	823	802	825	0.89
23	27	6.2	7.8e+02	2.0	0.1	1	14	831	844	831	854	0.77
24	27	0.0031	0.38	12.4	1.2	2	23	857	879	856	879	0.92
25	27	0.021	2.7	9.7	0.4	2	22	897	917	896	919	0.88
26	27	0.053	6.7	8.5	2.6	1	23	925	948	925	948	0.96
27	27	0.55	69	5.3	2.0	1	23	969	992	969	992	0.92

Sequence Information

Coding Sequence: ATGTTTGCCTGCACCTACTGCGCTAAAACTTTCTACTCCGAAAATGGAAGAGACAATCACACTGCAAATGTACATGGTGCTAGTGCAGTGCAACAAATTGCAGAAGCCCTTTGCACTTGGCAAGGTGTAATAAATCATCTAGATGTCTATAAAAATACCATTTCTGGTTTATCACAAGCAGTAACATCGCCTAAAATAGTAGCCAAAGAAACATATCCATGTAATCAGTGCcataaagaattttcaaaaaGAAAAGGTAGACAAGCTCACGTTCAGGCAGTTCATTCTAACTTGATTGAAATGAAATCAAATgacgttaaaataaataatacaacttCATTATTATGCATGGGATGTTCTCAATCATTTAAATCTACCAAAGACCTGGACCAACACAAATTAGCCAAACATGCAAATAATCAGTCAACTCATGCCATACCTTGCACAGAATGTTCTCAAAAATTTCAAACTCCAGTACAATTATTTCAACACAAAGAGGCAAAACATAATAAGGGTGttatttgtaatatttgtttgcAACATTTTAAGTCTATGAAAGATTTAGAACAGCATAAAATGGGTAAACATGGAGTTTCTCAAAAAATTCAATCATCTCTTATAAATGTCATAACATGTAAAGACTGTTCCCAAACATTCCAAACAACTACACAGTTAGCTCAGCATAAAGAGGCAAAACATAATAGTACTGTTTTTGCCTGCAACTTTTGTTTGCAAAATTTCAATGCTATTAAAGATTTAGAACAGCATAAAATGGCTAAACATATGGTTCCTCAAAAATTTCAAACATCTGCACAGTTAGTTCAACATAATGAGATAAAGTCTAAAAATAAAGGTTTTGTTTGTAACTTTTGTTTGCAAAATTTCAATGCTGTTAAAGATTTAGAACAGCATAAAATGGCTAAACATATGGTTCCTCAAAAATGTCAAACACCTGAACAGTTAGTTCAACATAATGAGGTAAAGTCTAAAAACAAAGGTTTTGCTTGCAACTTTTGCTTGCAAAATTTTAACGCTATGCTAGATTTAGAACAGCATAAAATGGCTAAACACATGGTTCCTCAAAAATGTCAAACACCTGCACAGTTAGTTCAACATAATGAGGGAAAGTCTAAAAATAAAGGTTTTACTTGCAACTtttgtttacaaaattttaacGCTATTAAAGATTTAGAACAGCATAAAATGGCTAAACATATGGTTCCTCAAAAATGTCAAACACCTGCACAGTTAGTTCAACATAATGAGGTAAAGTCTAAAGATAAAGGTTTTGCTTGCAACCTTTGTTTGCAAAATTTCAATGCTATTAAAGATTTAGAACAGCATAAAATGGCAAAACATATGGTTCCTCAAAAATGTCAAACAACTGCACAGTTAGTTCAACATAATGAGATAAAGTCTAAAAATAAAGGTTTTGCTTGCAACTTTTgtttgcaaaattttaacgcTATGCTAGATTTAGAACAGCATAAAATGGCTAAACATGGAGAAATAATTCAGTCGCCTTTAGTAAATGATATATCATGTGCAGTTTGCTCTCAAAGATTTCACACATTGGTGCAGTTACttcaacataaaataaataaacataactGTAATGACTTTGTTTGTAGTTTTTGTTTGCAACAatttaattctttaaaagaattAGAGCAACATAAAATGACCAAGCATGGACTTTCTCAATTGATGGAGCCACctttaaaaaattcaacttgtttagattgtccagaaaaatttcaaacttcggTACAGTTAAGTGAAcataaaaaaaaggataatACCAGGACAAGTAAACAACATAATAATGAGGTCATGGCACAACACCTAGAAGCAGCTCATCAACATAACAGTATACTTTGTAAATACTgctttcatatatttttaaatgagctTTCTTTAAATGACCATTTACGAACTGTTCACCATGTTGATTTAATTCGTAATGAGGGTGTGGAGAATAACTCATTAAAAGTTCAAACATTGACTTGTACTTTTTGCAGTAGACAATTTCCAAGCTTAACAGAATTACATGCACATATGAATCAGGGAATTTGCTTCTGCTTATGcatatattgcaaaaaaaaattcattggaGAAACTGAACTGAAGCAACATTTACAAGAAGTGCATAAATTTGTAGACTATTTTCCTTGTCAAAATTGTAGCCAAGTTTTTTTTTCCGAGTCAAATAGACAACTTCACATGGACACTGCACATGTATCTATGTGCGGCTACTGCTTTAAACAATTTAGCGGTAGAGATCATCTTGAAAAACATAAGCAAACTGTACACAGAGATAAAGATTATTTTCCATGTGATGCTTGTACAGATATTTTCACTTCTAATATCTCTAGGAAAAAACATATGGATCTAACACATAAAGTGACTTGTAGCTATTGTGTTAAAACTTTCAATGCACTTACACATTTAAAGCAACATGAAgaagataaacataaaaatatcaatttcttTCCATGTAATTCTTGCtccttaatattttcttctgcgAATATAAGAAATAGTCATATAGAAGCTGCTCACAAGATAAAATGTAGTTACTGTGCAAAAACGTTTACAGAAATTAATCACTTAGAGCAACACCAAGCTGACAAACACAACAATGACTCATTTCCTGAACAAATAACAGAACACATCGATCATAAAATACAGTGTAAATACTGCTCAAAAGAATTTGagcagtatatttttttacaagaccatgaagaagctaaacATAAAAACGTCGATTACTTTCCTTGTGACTATTGTTCTGAAATATTTAACTCTAATATAAGCAGACGAAAtcaccatttaaaaaaacacggTGTCACAAATAGTAAAAGTATTAGTCCAACAAGTCAAATATTAAGTGAATCTGATAGTTTCATTTGTCTTCGTTGTTTAGAACATTTCAGTACAAGTGAGGAATTTGATAAACATGGAAAAGAAAAACACACTCAAGAAGGGGGGTCTGGTTCTGATGAGGTGTTTGATAATCTGCACAGTGCTAAATTGCAAGAACAATTAGAACACACCAGAAAAGTGCTAGAACAAATTCATGTAGCTAATAAATCATAA
Protein Sequence: MFACTYCAKTFYSENGRDNHTANVHGASAVQQIAEALCTWQGVINHLDVYKNTISGLSQAVTSPKIVAKETYPCNQCHKEFSKRKGRQAHVQAVHSNLIEMKSNDVKINNTTSLLCMGCSQSFKSTKDLDQHKLAKHANNQSTHAIPCTECSQKFQTPVQLFQHKEAKHNKGVICNICLQHFKSMKDLEQHKMGKHGVSQKIQSSLINVITCKDCSQTFQTTTQLAQHKEAKHNSTVFACNFCLQNFNAIKDLEQHKMAKHMVPQKFQTSAQLVQHNEIKSKNKGFVCNFCLQNFNAVKDLEQHKMAKHMVPQKCQTPEQLVQHNEVKSKNKGFACNFCLQNFNAMLDLEQHKMAKHMVPQKCQTPAQLVQHNEGKSKNKGFTCNFCLQNFNAIKDLEQHKMAKHMVPQKCQTPAQLVQHNEVKSKDKGFACNLCLQNFNAIKDLEQHKMAKHMVPQKCQTTAQLVQHNEIKSKNKGFACNFCLQNFNAMLDLEQHKMAKHGEIIQSPLVNDISCAVCSQRFHTLVQLLQHKINKHNCNDFVCSFCLQQFNSLKELEQHKMTKHGLSQLMEPPLKNSTCLDCPEKFQTSVQLSEHKKKDNTRTSKQHNNEVMAQHLEAAHQHNSILCKYCFHIFLNELSLNDHLRTVHHVDLIRNEGVENNSLKVQTLTCTFCSRQFPSLTELHAHMNQGICFCLCIYCKKKFIGETELKQHLQEVHKFVDYFPCQNCSQVFFSESNRQLHMDTAHVSMCGYCFKQFSGRDHLEKHKQTVHRDKDYFPCDACTDIFTSNISRKKHMDLTHKVTCSYCVKTFNALTHLKQHEEDKHKNINFFPCNSCSLIFSSANIRNSHIEAAHKIKCSYCAKTFTEINHLEQHQADKHNNDSFPEQITEHIDHKIQCKYCSKEFEQYIFLQDHEEAKHKNVDYFPCDYCSEIFNSNISRRNHHLKKHGVTNSKSISPTSQILSESDSFICLRCLEHFSTSEEFDKHGKEKHTQEGGSGSDEVFDNLHSAKLQEQLEHTRKVLEQIHVANKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -