Basic Information

Insect: Crepidodera aurea
Gene Symbol: -
Assembly: GCA_949320105.2
Location: OX439474.1:63739720-63745514[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.13 16 7.3 1.4 2 23 72 93 71 93 0.84

2 8 0.099 12 7.7 2.7 1 23 99 121 99 121 0.98

3 8 0.0041 0.51 12.0 3.3 1 23 127 149 127 149 0.93

4 8 0.00022 0.028 16.0 0.1 1 23 155 178 155 178 0.97

5 8 0.00045 0.057 15.0 3.8 1 23 190 213 190 213 0.95

6 8 0.004 0.5 12.0 0.2 3 23 224 244 222 244 0.96

7 8 1.8e-08 2.3e-06 28.9 1.9 1 23 250 272 250 272 0.99

8 8 2.9e-06 0.00036 21.9 0.2 1 23 278 300 278 300 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.13	16	7.3	1.4	2	23	72	93	71	93	0.84
2	8	0.099	12	7.7	2.7	1	23	99	121	99	121	0.98
3	8	0.0041	0.51	12.0	3.3	1	23	127	149	127	149	0.93
4	8	0.00022	0.028	16.0	0.1	1	23	155	178	155	178	0.97
5	8	0.00045	0.057	15.0	3.8	1	23	190	213	190	213	0.95
6	8	0.004	0.5	12.0	0.2	3	23	224	244	222	244	0.96
7	8	1.8e-08	2.3e-06	28.9	1.9	1	23	250	272	250	272	0.99
8	8	2.9e-06	0.00036	21.9	0.2	1	23	278	300	278	300	0.98

Sequence Information

Coding Sequence: atgtatttCTATTTCAGAGATTTATCGTCAGTGATCAAAATTGAAAAGACCGATATAGAACCTGATATACGCCAAAAAACTAATTTCAAaccagtaaaatttaaaaacaaaccaAACGTAACTAAACTTGAAAGTCAAACCAATCGTCGCAAAAacaaaaaccccaaaaaacTCGTACTTCATCCACCACCTCTTGAATTAAGAGATCCCATTCAATGCGACGATTGTAGTGCATGTTTCAACAACAATGTAGATTTTGCTTTTCACTCCTTAAAACACAGCGAAGATAAAAAATACACCTGTCATTTGTGCAGTTATCGCAACAGTTCCAGGTACCAAATGGAGCTACATGTCAGAGCTCATGAGGGTACCACCAAATACAAATGTGAGATTTGTGAAAAAGCTTTTACAGTTAGTACTCACGCTATGGAACACAAACATTTTCATACTGGAGAAAAACCTTTTGTCTGCGAAGTTTGCGGAAAAGAATTCATGTTTTCTTGGAGATTGGCAGCTCACAGAAAGATTTCCCATTATGAAGTTCTAACAGgcaaaCCTTTAGTAAAATTTGACTGTACCAGATGCAATAAACATTACAAATCAGCCAGTGGTCTTAGAACGCATACGATAAAAAAACACAAAGCCGACGAAATCGATCTCTCAGTCATTTGCGAAATATGCGGAAAAAAACTGGCCAACAGGGAAAGACTTAAATTCCATCTTCGAATCCATACTGGTTACAAACCGTACTCTTGTCACGTTTGCCCAAaaagtttttctaaaaaagATCAACTCATCGAACACATTCGAACTCATACGGGAGAGAAACCTTATGTGTGTAAAATATGTGGTAAAGGATTTGCACAGAGGACGCCATTGAAGACTCATGAAAAGATACATGATCAAGAGAGAAGGAAGTCGAAttgttaa
Protein Sequence: MYFYFRDLSSVIKIEKTDIEPDIRQKTNFKPVKFKNKPNVTKLESQTNRRKNKNPKKLVLHPPPLELRDPIQCDDCSACFNNNVDFAFHSLKHSEDKKYTCHLCSYRNSSRYQMELHVRAHEGTTKYKCEICEKAFTVSTHAMEHKHFHTGEKPFVCEVCGKEFMFSWRLAAHRKISHYEVLTGKPLVKFDCTRCNKHYKSASGLRTHTIKKHKADEIDLSVICEICGKKLANRERLKFHLRIHTGYKPYSCHVCPKSFSKKDQLIEHIRTHTGEKPYVCKICGKGFAQRTPLKTHEKIHDQERRKSNC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -