Caur019348.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- -
- Assembly
- GCA_949320105.2
- Location
- OX439474.1:64014438-64038025[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.095 12 7.7 0.0 3 23 611 631 609 631 0.95 2 15 0.0076 0.96 11.1 0.1 2 23 652 674 651 674 0.92 3 15 0.14 18 7.2 4.9 1 23 679 701 679 701 0.97 4 15 8.1 1e+03 1.6 0.1 1 20 708 728 708 732 0.61 5 15 0.29 37 6.2 0.8 1 21 737 759 737 760 0.91 6 15 0.14 18 7.2 0.0 2 23 890 911 889 911 0.96 7 15 0.0046 0.57 11.9 0.8 2 23 930 952 929 952 0.94 8 15 0.0037 0.47 12.1 0.8 1 23 957 979 957 979 0.97 9 15 1.7 2.1e+02 3.8 1.2 1 23 986 1010 986 1010 0.74 10 15 0.00014 0.017 16.7 0.7 1 23 1015 1037 1015 1037 0.94 11 15 0.0016 0.2 13.3 1.7 1 23 1043 1066 1043 1066 0.96 12 15 0.04 5 8.9 1.1 1 23 1076 1099 1076 1099 0.96 13 15 0.0003 0.038 15.6 0.2 1 23 1105 1127 1105 1127 0.96 14 15 2.7e-05 0.0034 18.9 1.2 1 23 1132 1154 1132 1154 0.99 15 15 1.3e-07 1.6e-05 26.2 4.1 2 23 1161 1182 1160 1182 0.98
Sequence Information
- Coding Sequence
- ATGATTCCGAATAATGGATATTACGCGGAAGAAATCGGAAAATCCAGAGAAATTTCACGCTATCGCAGACACATTTTACACATTGACCTACAAAAACTAGAAGAAACTGTAGATCTCAGCTTAAATGactatttcaaaaattctttaaaaaatggACCACTTTCTCTGTTAAATACCCAATACAATCACATACACGGTGAAGCAGAAGACAGCTTACATAAAATAACTCGAAAACTGAAACGAggattatttaatttccttggTACAACCATAAAATACATAACCGGAAATCCTGACGACTCTGACTTAAATCTACTAAAGACCCACATTGCTGCAATAGAAGTTAAACAAAttgaaataataacaaaatttaataatcaaATCTCATTCGGCCAATCTATTAATACGAGATTCAATAAACTTTTAGAgcaaataacaaaaaacaataGGGCACTTTTACTAGCAATTAATAAGTTATCAGCTGATTTCGATGGATACATTACCCTACATAACGAAATAATTAATCTTCAAAATATAAACGAATTTCTCATGAAACTTATCCGAACCATAACCCTGTCACATCTCAATTTGTCTAATATAGAATTATTCACTCTTAAAGAACTCGAAGATCTAAAAAGAAATCTCATAGAAATTTACTCAAGAAATGCCCTACTCACTACAATGCTCATAATACTCAAAATCCCAATCCTCTACGTTAATTCCTACCCTACCTTTAGAATTTATCCTATTCCCACCAACGATCACATCATGCTATTACCACCTGCACACTATTATGCCAATAGCAAATGGTATGAAACGTGTACCGGCCAAGCAGAATACACCATATGTATCAAACCTGTTAAATCCAGATGTGCCATCCCTAATGTTCAAAATTGCACCAAAACGTTGATTACAGAAAATTTTTCACAAGAAACCAGCAAAGTAATCTTATTAGGAATAGTCTACCCAATCAAAATACAACAACAAGAAATTCGAAGAAGCAGCATCCTGATGTCAGAGGAACCTATCGACATAGACGGAATTCACTATGCAAAGAAAACTATTCAAGAAATTGCCATTCCAGAGATAGTGCCAATTAAGTTAATTTCTGAACATAAATTGACGatcgaaaaattaaatattccagAAAGCCACAGACAACTCCAACCAATAGAACCAATAGCACTTATGCCAAGAATCTCCACAGGACTCAGCACTATCGCTTTTGTTCTTATAATTTCTGTTTCAGCCATCCTTTTGACCATCgtagtgaagaaaaaaaaaagaatatcaaAACTTCTTTTCGGACCCAAACTACAACCAGCACAAATCCAGGCACTCCAGGAGTTACTCACAGAGGCTTCGAGGGCGAAGCCAGGACCAAAGGAGGGAGGAGAaatCGTCTTCATAAAAAACCCAGATCTACTTCATGCTATTCCACCTAGCAAAAATTTAGCGAAACTTGTGCCAATATGTCAAAATGGATATGGGACAATTTGTATGTTAGTTCAACCAAATACTACATGTTTTGCCGAAAACACCAATCGAACAATTCCAAATAATAATCAATATGTTGCGGAACCTCAATTTATAAATATGTCACATTATAAATCTAGTGATCTAAAGAAGTCTATCGCTTATGAAAAGACTGCAACCGAAATTAATAAAGGACAATCATCCCAATaccacaaaaatgaaaatgctataaaaaaatataagaatccATTTGATTATATGTACATAAACAGAAATATAGatcgaaactttgccaaacgcaGGTTAGAGTTACGGGAAAAAGAACTAAACAAAGATCAAAGTATTACATGGAATTGCCTCATTTGTGCTGTAAAGTACGAAACGAAATCTGCGTTAATTGATCATTACGAAATGcataaaaatgtaacagatcaattaGAAGATAATAACGTTAGCAATAACAAAGTAGAAAGCATTAGTTGCCCTGTTTGTAATATAACGTATAAGAATGAAGCGTCGTATCTCAGGCATGTCGTTTCAAATCATAGACCAAAAGAATATTGTTGTAATGTATGCAAGAGTCATTTCGATAATGAATATTATTTAAGTCTGCATATGTCCCTACATAGCAACGATCGTAAAACTTTTGTTTGTAACGTATGCAAACAATTTTCAACGACTGAAACTCCAGCCTTGGCTGCTCATATAAATGCAGAACATGTTaaagatgtatttttttgtgaagAATGCGATTGTGATTTAACGTTTCCACTGGAGAAAAATTTAATATCCCACAATCGttaCACCAGTGGACCACCAGGCCAAGTGCAAAATGTTCTATCGAACCTCAATATACCACCATTATCAGTAATCCAAAATGGATCTAGGCCCTATTATTTATTACTACCACCAAATACAAACCAAAGTAATAATATTCGACTGCAACCAATTTCTGCAAACATAGCTGTTAAAAAACCTCAATTGACATATGTACCTATTATGCATCAAATGCCCACGATCAAATATCTTATtctaaataaacaacaaaatattatCAAGAAAAAAAGTACAGAAGTAGAGGGATACAAAAATCCTTTTAATTACAAGTTTatcgataaaaatataaacagaGGATTTGTTGAGCGTATgttaaaattagaagaaaaagaaCTAACTGAAAAAGTAACGTGGAAATGCATGATTTGTGCCACAACATATGAAGAAAAAGACGCGTTAATAGATCATTATgaagtacataaaaaaatatcagaccAATTGGATGATAATATTAACAATGAATCAGAAAACATTAAATGCCCCGTTTGTGAACacagttttaacaatgaaaTGAGTTACAACGCCCATGTTCAACAAAAACATAGACCAAAAGAATTTTCTTGCAATAAATGTGACAGTAATTACAACAACGCTTATTACTTAAGCGTTCATCTTGCACGGCATAGTTCAAATACTAATATATATGTTTGCGTTGAGTGTAAACAATTTTGTACCACACAAACCCAAGAGCTGTCTGCCCACATACTTAAAGAACATGTTAAAAACGTATATCCTTGTAAGGAATGCGGGAAATCATTCACCTCTGAGATTTGGTTCAGGGATCATAAAATATTTCACCTAAAACACAAGAAATTCTTTTGCGATAAATGTAAGATGGTTTTTCCAAGTCAACGATTTTTTATAGCCCACATGAAAAACACCCATAAGATAACTATTGATATGGACGTTAAATTTAAGTGTTTCCAgtgtaatttaaattttccaatGGAAAACAATCTTTTATCGCACAATAGATACATACATCCGCAACCAAATACTTTTCTGTGTAATACTTGTGGCAAGGGATTTCCCCTCTATGCAGCCTTATCAATGCATATGAAGACACATGAAGAAGGACAATATGTCTGCAGCACTTGTgggaaaatatttaagaaaggcCAAACTCTAAAATTACACCTTCGTACTCATACTGGAGAAAAACCGAATAAATGTAATGAATGTGGCAAGTGTTTTACACAAAAATCAACTCTAAATGTTCATCTCCGAACTCATTCGGGAGAAAGACCTTATCCCTGTGGGAAATGCATGAAGGGATTCATTACAAAAACGATAAGAGATATCCATCAAAAAACCTCAGCCATATTAACTTATAGAAATGGTCGTTGTGTTAATTGTCCTATTGGAATAAATACTATGGGAAGAGTGGCCAAAAATATTGCTGAGTATCTTAAACTTCCCAATCCAGAATTATTTACTAGCCACTGTTTTAGAAGATCAAGCGCCACACATTTAGCTAATTGTGGTGGAgatttattaacattaaaacgGCATGGTGGATGGAAGTCCGCTGCCGTGGCGGGGGGTTATGTAGATGCTTcgctaaaaaacaaaattgaaatttcgaGAATGTTCAGTTCTAATGAAAATGATATTAACGTACCTGGATGTTCGAACAATAAAACTTGTACGATAACTAGCGAGAATATTGATAAAACAATCAACCGAAACATTGATGTTGTGTCTAGTGATTCTGGTTTTGCATTTCCTACTGTTGCTGATATTTCATTACAAAACGAAAATGAAATCTCTACAACAATGATCAATGCTCAAGAAACTTCTAATTCTAATCCTGCCGCTCTTATAATTAATTCTAGAGATACCTCTAATGTAACTATTAATTATAATGTGTACAACAATTGTACTATTAACAGTAAGATGAattaa
- Protein Sequence
- MIPNNGYYAEEIGKSREISRYRRHILHIDLQKLEETVDLSLNDYFKNSLKNGPLSLLNTQYNHIHGEAEDSLHKITRKLKRGLFNFLGTTIKYITGNPDDSDLNLLKTHIAAIEVKQIEIITKFNNQISFGQSINTRFNKLLEQITKNNRALLLAINKLSADFDGYITLHNEIINLQNINEFLMKLIRTITLSHLNLSNIELFTLKELEDLKRNLIEIYSRNALLTTMLIILKIPILYVNSYPTFRIYPIPTNDHIMLLPPAHYYANSKWYETCTGQAEYTICIKPVKSRCAIPNVQNCTKTLITENFSQETSKVILLGIVYPIKIQQQEIRRSSILMSEEPIDIDGIHYAKKTIQEIAIPEIVPIKLISEHKLTIEKLNIPESHRQLQPIEPIALMPRISTGLSTIAFVLIISVSAILLTIVVKKKKRISKLLFGPKLQPAQIQALQELLTEASRAKPGPKEGGEIVFIKNPDLLHAIPPSKNLAKLVPICQNGYGTICMLVQPNTTCFAENTNRTIPNNNQYVAEPQFINMSHYKSSDLKKSIAYEKTATEINKGQSSQYHKNENAIKKYKNPFDYMYINRNIDRNFAKRRLELREKELNKDQSITWNCLICAVKYETKSALIDHYEMHKNVTDQLEDNNVSNNKVESISCPVCNITYKNEASYLRHVVSNHRPKEYCCNVCKSHFDNEYYLSLHMSLHSNDRKTFVCNVCKQFSTTETPALAAHINAEHVKDVFFCEECDCDLTFPLEKNLISHNRYTSGPPGQVQNVLSNLNIPPLSVIQNGSRPYYLLLPPNTNQSNNIRLQPISANIAVKKPQLTYVPIMHQMPTIKYLILNKQQNIIKKKSTEVEGYKNPFNYKFIDKNINRGFVERMLKLEEKELTEKVTWKCMICATTYEEKDALIDHYEVHKKISDQLDDNINNESENIKCPVCEHSFNNEMSYNAHVQQKHRPKEFSCNKCDSNYNNAYYLSVHLARHSSNTNIYVCVECKQFCTTQTQELSAHILKEHVKNVYPCKECGKSFTSEIWFRDHKIFHLKHKKFFCDKCKMVFPSQRFFIAHMKNTHKITIDMDVKFKCFQCNLNFPMENNLLSHNRYIHPQPNTFLCNTCGKGFPLYAALSMHMKTHEEGQYVCSTCGKIFKKGQTLKLHLRTHTGEKPNKCNECGKCFTQKSTLNVHLRTHSGERPYPCGKCMKGFITKTIRDIHQKTSAILTYRNGRCVNCPIGINTMGRVAKNIAEYLKLPNPELFTSHCFRRSSATHLANCGGDLLTLKRHGGWKSAAVAGGYVDASLKNKIEISRMFSSNENDINVPGCSNNKTCTITSENIDKTINRNIDVVSSDSGFAFPTVADISLQNENEISTTMINAQETSNSNPAALIINSRDTSNVTINYNVYNNCTINSKMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -