Caur008569.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- -
- Assembly
- GCA_949320105.2
- Location
- OX439472.1:108519215-108521632[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.41 51 5.7 2.6 1 21 120 140 120 141 0.94 2 18 0.00016 0.021 16.4 1.3 1 21 155 175 155 176 0.96 3 18 0.013 1.7 10.4 2.3 1 21 189 209 189 210 0.95 4 18 0.00071 0.089 14.4 3.3 1 22 222 243 222 243 0.95 5 18 0.0087 1.1 11.0 1.2 1 21 247 267 247 268 0.94 6 18 0.00036 0.045 15.3 1.2 1 21 282 302 282 303 0.95 7 18 0.0011 0.13 13.8 1.6 2 23 338 359 337 359 0.95 8 18 0.0051 0.64 11.7 2.8 1 23 363 385 363 385 0.97 9 18 0.00026 0.033 15.8 4.2 1 23 390 412 390 412 0.95 10 18 0.0021 0.27 12.9 0.6 1 23 418 441 418 441 0.89 11 18 0.014 1.8 10.3 2.5 2 23 447 468 446 468 0.97 12 18 0.0008 0.1 14.2 3.9 1 23 470 492 470 492 0.98 13 18 2.7 3.4e+02 3.1 2.7 2 23 511 534 510 534 0.75 14 18 0.6 76 5.2 0.7 1 23 540 563 540 563 0.87 15 18 0.011 1.4 10.7 0.4 1 23 572 594 572 594 0.98 16 18 0.00034 0.043 15.4 5.3 1 23 600 622 600 622 0.98 17 18 0.00032 0.04 15.5 2.9 1 23 628 650 628 650 0.98 18 18 6.8e-05 0.0085 17.6 0.9 1 23 656 678 656 678 0.97
Sequence Information
- Coding Sequence
- ATGGGACGCACTTGTTTTCAGGCAGAGGAAGAAGACGGGTTTCCACAAAAGATATGCCAGCAGTGTGCAGATTTGATAAATGAACTCTATTCGTTTAAACAATTAGTTGCTGAAAATCAACTTATTTTGCAATTAGCTTCTTCGAATTTAAAAGCTTCTGAACTATCTGAAGGTAATTTTACTGTGAGAAAAAGAACAGAACCACGTGAGAATGATTCTGATGTATTTAATATAGATCTTTTTAATGGTAacgaaaatattgaaattattgATGATAGTTCTATAAAACAGGaaatagaaacaaaaaataCCGGTTTAAATCTAGACCATGATTATTCTAAAATTATGAACGCAAGATTCTCTTGCCCATGTTGTTCTCTGACATTTAATCATCGAGGTGAATTTATTAGTCACAGAATGCAAGAAGCCAAAAAAGCAAAATTAAACgagaatcaaaaaaatttcacttgtCTATATTGCAATCTTAAATTCAACACTCGAAGTGACTTTATGATTCATATGAAGAATAAAAGTGAGAGGGAAAAAATCGAGGTTAAAGAGGAATATACTTGTCCAAAATGTAATATAAAGTTTCATGGTAGACGTGAATTTCTAAGACACAGAAAGCAAGAGAGAGATTCTATGGTACCTCGTGAAAgggaatttatttgtaaacattGTAATCTTAAGTTCAACTCTCAAAGAGAATATATGCGACACAGACGATCCGAACTAGAATATAGTTGTTCAAAGTGTAATCTTAAATTTAACTCTCGAACCGAATGGATACTTCACAGAAAGAAGGAAGCAAGAAAGAAACCAAATAATCTAATTTTTGCAGAATTTACCTGTCCTTATTGTAAACTCAAGTTTAATTCTCGTGCTGAATATATGAAACATAGAAAAGAAGAAGCTAAGAAAAAGTCTATGTGTCCTTATTGTAGGAAAATCATGCACACGAGTCTATTTGACAATCATTTAagattaaaacacaaaaaattaccACCTTTGAAGTGCGAGTTTTGCAAAAAACGTTTTGTATCATCAAAGCTTTTCGATAGACACTTATTGGGCCATAAAGAGGGTTTCTTTTGTGAGATATGTGGAAGAAAATGCCTGACTGAATCAGCACTTAAGTCTCATAAAAGATCACATGTTAGAGAAgaatttttatgtaatatttgTAACAAgacttttaaaaatcattatttatataaagaTCACGTGTATACACATACCGGCGCTAAACCTTACCTCTGCTCTGTATGTGGGGCTAGATTTAATTCGCAAGTAAATTTGTACAGTCACAACTACATGAAACATGTGGATCGACCTCTTAAATGTCGTTTATGCGGAAATGGTTTTAAAACGGATAAGAAATTCAAAGAGCATCTTAAAAGGCATGAGCACGAGTGTAATATTTGCGGtcaatattttatgaaaaaatcttgCCTAGTCATTCATTTAAAAAGTCACGATGATAAGGTTGAAAcagaaaattttgttaaaaatagtaaaaaggaaaaaatcaaATGCTTATCCTGCTCCAAAGAATTTATCAGTTCAGTAAAAGTCAACTTTCAGTTACATATAAGAACCCATTTAGGTGAATCCCCGTACTTATGTTTATTCTGTGGTAAACAGTTCCAATTAGAAAACCAGTACAATGATCACAAGGAGCTGCTACATGCcaataaaaaactagaaaaactCTATAAATGTCTCATATGCTCTAAGATTCAAGGGTCGAACGCCGCGTTAAAAAGCCACATGCGATTTCATACGGGGGAAAAACCTTTCCAGTGTACCGCTTGCGGGAAACACTTTTATACTAAAACTCATGTGAAAACTCACATGCTTTGGCACACCGGAGAAAGGTCTTTCTCGTGCACCATTTGTGAAAAAACTTTTGCAACTAAGGGTAATTGTTTACAACACGAAAGAACACACACAGGTCAAGGAAGTTACACGTGTAATTTGTGTGGGAAAATATTCCGAAGTGAAACTAGTATAAGGAAACATTCTCAAATCCACAACAAAATTGTTTTAGGACATGTGAATAATCTTAACAATATTCGTGATACAGTTTAA
- Protein Sequence
- MGRTCFQAEEEDGFPQKICQQCADLINELYSFKQLVAENQLILQLASSNLKASELSEGNFTVRKRTEPRENDSDVFNIDLFNGNENIEIIDDSSIKQEIETKNTGLNLDHDYSKIMNARFSCPCCSLTFNHRGEFISHRMQEAKKAKLNENQKNFTCLYCNLKFNTRSDFMIHMKNKSEREKIEVKEEYTCPKCNIKFHGRREFLRHRKQERDSMVPREREFICKHCNLKFNSQREYMRHRRSELEYSCSKCNLKFNSRTEWILHRKKEARKKPNNLIFAEFTCPYCKLKFNSRAEYMKHRKEEAKKKSMCPYCRKIMHTSLFDNHLRLKHKKLPPLKCEFCKKRFVSSKLFDRHLLGHKEGFFCEICGRKCLTESALKSHKRSHVREEFLCNICNKTFKNHYLYKDHVYTHTGAKPYLCSVCGARFNSQVNLYSHNYMKHVDRPLKCRLCGNGFKTDKKFKEHLKRHEHECNICGQYFMKKSCLVIHLKSHDDKVETENFVKNSKKEKIKCLSCSKEFISSVKVNFQLHIRTHLGESPYLCLFCGKQFQLENQYNDHKELLHANKKLEKLYKCLICSKIQGSNAALKSHMRFHTGEKPFQCTACGKHFYTKTHVKTHMLWHTGERSFSCTICEKTFATKGNCLQHERTHTGQGSYTCNLCGKIFRSETSIRKHSQIHNKIVLGHVNNLNNIRDTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -