Basic Information

Gene Symbol
-
Assembly
GCA_949320105.2
Location
OX439474.1:61790144-61796257[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00059 0.074 14.6 0.4 1 23 185 207 185 207 0.97
2 10 8.8e-05 0.011 17.2 1.3 1 23 213 235 213 235 0.98
3 10 1.8e-05 0.0023 19.4 0.9 1 23 241 263 241 263 0.98
4 10 0.2 25 6.7 0.9 1 23 269 291 269 291 0.94
5 10 8.9e-06 0.0011 20.4 0.5 1 23 297 319 297 319 0.97
6 10 7.3e-06 0.00091 20.7 0.8 1 23 325 347 325 347 0.98
7 10 8.6e-05 0.011 17.3 4.8 1 23 353 375 353 375 0.98
8 10 0.00012 0.015 16.9 1.4 1 23 388 410 388 410 0.95
9 10 0.00097 0.12 14.0 0.2 2 23 416 437 415 437 0.97
10 10 2.1e-05 0.0026 19.2 0.3 1 23 443 465 443 465 0.97

Sequence Information

Coding Sequence
ATGGAAGAGAGAGCTAATATTCTCAAGCAAATGAAAGTATGCAGATTTTGTCTTTCGGATGAGGAAAACGATTTAACTAACATTCAtgataaaattgtcaaaaataacgATTCAACAGTAACTTTACCTTCTCTTCCTCTTCAAATAATGGCCTGTATAGCCATAGAAGCTATCAGAAGTGATAATATGCCACCATTTATTTGTCATAATTGTCGCAACTTGACCACCCAAgcttacatttttaaaacaaattgcaaGAAAGCAGATGATGCTCTAAAACTGTTTCTTGTTACTGGACAGCTTTCAAAACCCCATCTGCAAAATGTGGTTCAGATAAAAGTCCATCCAGTTGAACAAAAAACACTTAAAGTGATTCATGGAGATGGAGGAGATGAAGATACTGAAAAATTACATTCATCACCAACTagagaggaagaagaagaaactcAAATGGAGTATGAAGAAATGGATGAAATTGAAGTAGATGAATCAGTTAGTGatgaagtaataaaaataaataaaacacctGTACCACAAGTCAGAACTCATTGCTATTCTTGTACAGAATGTGATAGGTCATTTCCTCTGAAGCAACTTTTAGACCTTCATGTTAAAAATCATTATAGAGAGCGTAATTTTGAATGTGAAGTTTGCCAAAGCAAATTTTACACCAAATATGATCTTCAGAAACATGCTCTTACTCATAATCCTAACAAAGAGTATGAATGTGTTGTTTGCCATAAGACCTTTGCTAGAGAGCCTATGTTAAGGCGACATGAGAAGATTCATATAGATGCACCGAAGTATGTCTGTATAGAGTGTGATAAAACATTTTTGACCAAGGAGTATTTAGAATTTCATCTACAGAAGCACAATAAAAAGAAGCCATTTACTTGTAATATTTGCAACAAgagttttgtttttaaacagGGCCTCGAACGCCACGAAATAGTCCATAGCGAAAACAAGCCTTATAAATGCAATTATTGCGAGGCAAGTTTCACTTCAGCCATCAAACTTACCAGACACATCACTTCACATGCTGGATTGCGTCCTTATCCCTGCAAACTCTGCGGTAGAACTTTCTTGTTAAGCCATCACCTCACTAGACACATGCGTAGTCACTATGCATCCAAAACATCAGTTGATCCTGTAGGTCAGCACAAGTGTGACATCTGTAGCATGTCGTTCAGGAAGAAAGATTCCTTAATTAATCACAGTGCTATACATTCAATGGTCAATTTGAAATGTGTTATTTGTAATACTACATTTGAGACGGCTAATTTGGTAAAAGAGCACATTACTACGCATTTGACAGGTTTGCCTTTTCCATGTGAAAAATGCGACTACAGTTTTGAGACATCTGAACAATTGGAAGAACATGAACTGAAGCATGCTGAGATGGAATATGAAGATCAAATAGAGAAAGAAGTGTTTTCGGAGACCTTAAATCAACAATATGATGATGAGGAGCAAAATTCTGATGAAGAAGATGAGGTCGAAGAAGGGGAAGTTAGAGAATATACCATAGTTGATATAAATAATCCAGATTCAGGAATAAGaagcagTCATGATGAGCCTGCAGAAACAGAAGCTACAGTGGTTAGACGAGACTTAGAGAAAGAATTTGGATCAAgggtagaatttttaaaagatgAACTTGAGAGCGACCTTGAAGAAGAAGCTGCTGCAGATGAAGAAGCATATGAAgatgatgaagaagaagaaattcaATCTATCAAGCCTATAGTACGTCATGAAGGGACCAAAGTATATGAGAGGAAAAATAATCCTACTAAACCAACACCAGATATTAgGTTAAGTTCTCTATTAGAGAAACAACAAGAAAACCAACAACAAACAACGTTGCCTTCAACTGACATAAACACTGCATCTGGAGTTAAAAAGGTTGGTGATAAAATGGTAAAAGTCCAAAAATTCATACTAACCAAAGATGAAATGAAAGCAATGGCCAAGCAGGGCATTCTGGAAGTGAAAAATGGGCAAGTTGTGCTGAAAAGCGGAGGCCAGCAAATTCTGAATGCAACTCTAAAAcctatacaaaaaaatgaaatcgaTTCGTTGTTGGACAGGAGACAGAGTGGTGCCAATAGGCTTCAAATTAAGAGATATGAAAAGAAGGTTGCGCCTGGACAAGAAACATAA
Protein Sequence
MEERANILKQMKVCRFCLSDEENDLTNIHDKIVKNNDSTVTLPSLPLQIMACIAIEAIRSDNMPPFICHNCRNLTTQAYIFKTNCKKADDALKLFLVTGQLSKPHLQNVVQIKVHPVEQKTLKVIHGDGGDEDTEKLHSSPTREEEEETQMEYEEMDEIEVDESVSDEVIKINKTPVPQVRTHCYSCTECDRSFPLKQLLDLHVKNHYRERNFECEVCQSKFYTKYDLQKHALTHNPNKEYECVVCHKTFAREPMLRRHEKIHIDAPKYVCIECDKTFLTKEYLEFHLQKHNKKKPFTCNICNKSFVFKQGLERHEIVHSENKPYKCNYCEASFTSAIKLTRHITSHAGLRPYPCKLCGRTFLLSHHLTRHMRSHYASKTSVDPVGQHKCDICSMSFRKKDSLINHSAIHSMVNLKCVICNTTFETANLVKEHITTHLTGLPFPCEKCDYSFETSEQLEEHELKHAEMEYEDQIEKEVFSETLNQQYDDEEQNSDEEDEVEEGEVREYTIVDINNPDSGIRSSHDEPAETEATVVRRDLEKEFGSRVEFLKDELESDLEEEAAADEEAYEDDEEEEIQSIKPIVRHEGTKVYERKNNPTKPTPDIRLSSLLEKQQENQQQTTLPSTDINTASGVKKVGDKMVKVQKFILTKDEMKAMAKQGILEVKNGQVVLKSGGQQILNATLKPIQKNEIDSLLDRRQSGANRLQIKRYEKKVAPGQET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-