Caur011104.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- Prdm15_1
- Assembly
- GCA_949320105.2
- Location
- OX439473.1:38380294-38383863[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.9 1.1e+02 4.6 0.3 2 23 199 220 198 220 0.92 2 11 0.0024 0.3 12.7 0.7 2 23 228 250 228 250 0.96 3 11 7.7e-06 0.00097 20.6 0.2 1 23 354 376 354 376 0.98 4 11 0.00028 0.035 15.7 4.4 1 21 380 400 380 401 0.94 5 11 0.005 0.63 11.7 3.7 1 23 406 429 406 429 0.97 6 11 1.5e-05 0.0019 19.7 2.4 1 23 448 470 448 470 0.98 7 11 4.4e-05 0.0055 18.2 1.2 1 23 476 498 476 498 0.98 8 11 1.4e-05 0.0018 19.7 0.5 2 23 504 526 503 526 0.94 9 11 8e-05 0.01 17.4 0.5 3 23 533 553 532 553 0.98 10 11 4e-05 0.005 18.3 4.3 1 23 558 581 558 581 0.97 11 11 2.4e-05 0.0031 19.0 1.4 1 23 598 621 598 621 0.97
Sequence Information
- Coding Sequence
- atggagattTGTGGAATTTGTGGGAACAACCACTGTTCAATGGACTGTGATATAGTACAAATTGTTTCTCATATTCCTGATAAAGTTATTCCATCTAAAGCGAAATTAACTTTACCAGAAGATTTACTTTTAAGAAAAATGGCAGATGATAGTTACAGCATAGTTGCAACATACGCAATCGGAAAAGGAACTCAGTATGGACCATTGCAAGCAAAAAAACTTTGTTCTTTATTACCCACAATTTGTTTTCCTTTAAGAGTGTTTTACGAAACTGAAGACGATTTTTCCGAATATTATTTAGATACTAGTGATGAAAATGAATGTAACTGGATGATGTTTATTAATCCAGCAAATGATTTTCAAGAACAAAATGTAGTTTGTTAtcagGACGGTGaagatatttattatgttactgTCAAAGATATATCTGAAGGTGAAGCTTTAAAAGTTTGGTACTCTCCTTATTATGCTACAAAGATGAAAAAAGATGTACTTAAACCTGTGATAAGTGAagagaatgaaaatttaaaaaacaatgaatgTATAGatGAATTGGTTCGAAAGAAAAAGAATATTACATCAAGAGAAATATGGAGTTGTAAATTCTGTGGGAAAATGGAGAGAATTCTATCAGAATTTGCTTtacatttattaaaacattatcGTACAAAATTAGGAAGGTACTGCCAAATATGTAACTCCTCTTTTACGAAAGTTCAAGGTTATCAAAAACACATGAAAATCGTTCATGAACGAGATGTTACAAACGTACGCTCACTGCAGTCAGAGTCAAAGTTAAATATCAAAAAGACAAATCTTATAGATCCTGTACCAAAGGAAAATTACTTTGGAGGACCTCTATTGATGAATGAACTGCTTAGCGATAGTATGGACAATGCCGGTCTAATACTACCTCAAATAGATTTAACAGTCATAgaaaatcaaaacaatttatttgaacatgaaaatttaaatttgaatgtgGAGTCTATTCTTCCTGAAAGCGTCAAAGTTATGGATAATTTTAACTTTGAGTTAGTCGAAAATGAAAACGAACAATTTGTCTGTGATATTTGTCTGAAGGTctttagaaaattaaaacaattgatAGTACATATGAATATCCATACTGGAAAATATGCGTGTTTTGAATGTAAAAAGGTATTTGCACGCCAAGAAAATTTAAACCACCATCACTGTAATGTATTTTACAAATTTGAGTGTCCTCATTGTTCGagacttttttttcaaaaaaaatatctcggtttgcatataaaaaaatatcatatcgAACAGGACAATGAACAGGACAACGTACAAGACTCATCATCATGTGAAACATTTTCGTGTCCTCagtgtttaaaaacttttacacATAAAAATAATCTAATAATTCACTCAAGAATTCATCAACCCAGAGAAAAATACACTTGTCCAATATGTAATAAATCACTGGTATCTCAAAAAACTTATATAAAACATTATAAGCTTCATGAAGGCAATGTGAATAAGTGTGAAATATgtgaaaaagttttcaatagaAAAGATACTTTAAAGTATCACATAGATTACGTTCATTCCGCTAAGATGgaaatttgtCCCATTTGCAATAAGGCAATGAAATCCAAAAAGTTGCTACAAGTTCACATGAAGTCACATAAAGAAAACTCTTTCAGATGTTCCCAATGCCCCTCAACtttcaaacaacaacataattTGAGTAGGCATATCAAAAATACTCATGAAAAGAACAAGGGAATACAGTCGTTCCTATCAAATATTGACAAACAATTCTCGTGTCCTAAatgtgataaaaaattaaaagtgagtAAATCTCTCAAGAGGCACCTCGAAACGATGCACCCTGAAGAAAAATTCGATTACAAAACTCTCAAATTAAACAAAACCGTTTTTAATCGACAAATCAATTTTTCGAAACAAGTTGAGGACTCCGTTATGGATTTAAAACAGACCATCGAAAATATGAACTACAGTACTGACGAAATTAATCACGAAATCACTATAGAGATAGACAAATTATTGAATAACCCTGAAAACTTTGGTAGTGAAAGTAATGATAGACTCGTCGAAAGTTTGATCAACACAGCTGTAGGTGAAACTAATTTGGATAGTAAAATACAACAAAAGGATCCTATGTTGTCCATGCCTACTTTGGACATCGATGATGatattaattga
- Protein Sequence
- MEICGICGNNHCSMDCDIVQIVSHIPDKVIPSKAKLTLPEDLLLRKMADDSYSIVATYAIGKGTQYGPLQAKKLCSLLPTICFPLRVFYETEDDFSEYYLDTSDENECNWMMFINPANDFQEQNVVCYQDGEDIYYVTVKDISEGEALKVWYSPYYATKMKKDVLKPVISEENENLKNNECIDELVRKKKNITSREIWSCKFCGKMERILSEFALHLLKHYRTKLGRYCQICNSSFTKVQGYQKHMKIVHERDVTNVRSLQSESKLNIKKTNLIDPVPKENYFGGPLLMNELLSDSMDNAGLILPQIDLTVIENQNNLFEHENLNLNVESILPESVKVMDNFNFELVENENEQFVCDICLKVFRKLKQLIVHMNIHTGKYACFECKKVFARQENLNHHHCNVFYKFECPHCSRLFFQKKYLGLHIKKYHIEQDNEQDNVQDSSSCETFSCPQCLKTFTHKNNLIIHSRIHQPREKYTCPICNKSLVSQKTYIKHYKLHEGNVNKCEICEKVFNRKDTLKYHIDYVHSAKMEICPICNKAMKSKKLLQVHMKSHKENSFRCSQCPSTFKQQHNLSRHIKNTHEKNKGIQSFLSNIDKQFSCPKCDKKLKVSKSLKRHLETMHPEEKFDYKTLKLNKTVFNRQINFSKQVEDSVMDLKQTIENMNYSTDEINHEITIEIDKLLNNPENFGSESNDRLVESLINTAVGETNLDSKIQQKDPMLSMPTLDIDDDIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -