Basic Information

Insect: Crepidodera aurea
Gene Symbol: -
Assembly: GCA_949320105.2
Location: OX439481.2:18243472-18245740[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.075 9.5 8.0 0.5 2 20 7 26 6 28 0.88

2 14 0.084 11 7.9 0.0 2 21 34 53 33 54 0.90

3 14 4.9 6.1e+02 2.3 0.1 1 12 115 126 115 129 0.89

4 14 1.1 1.3e+02 4.4 4.7 1 20 252 271 252 273 0.94

5 14 0.34 43 6.0 4.4 3 23 283 303 282 303 0.93

6 14 0.00028 0.036 15.7 3.2 1 23 321 343 321 343 0.98

7 14 0.00047 0.059 15.0 1.2 1 23 397 419 397 419 0.97

8 14 0.00061 0.076 14.6 3.8 1 22 425 446 425 449 0.90

9 14 8e-05 0.01 17.4 2.6 1 23 453 475 453 475 0.98

10 14 2.5e-06 0.00031 22.1 3.5 1 23 481 503 481 503 0.97

11 14 0.00022 0.027 16.0 6.7 1 23 509 531 509 531 0.98

12 14 1.5e-06 0.00019 22.8 0.4 1 23 537 559 537 559 0.98

13 14 3.2e-05 0.0041 18.6 0.1 1 23 563 585 563 585 0.98

14 14 7.5e-05 0.0094 17.5 0.1 1 23 593 616 593 616 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.075	9.5	8.0	0.5	2	20	7	26	6	28	0.88
2	14	0.084	11	7.9	0.0	2	21	34	53	33	54	0.90
3	14	4.9	6.1e+02	2.3	0.1	1	12	115	126	115	129	0.89
4	14	1.1	1.3e+02	4.4	4.7	1	20	252	271	252	273	0.94
5	14	0.34	43	6.0	4.4	3	23	283	303	282	303	0.93
6	14	0.00028	0.036	15.7	3.2	1	23	321	343	321	343	0.98
7	14	0.00047	0.059	15.0	1.2	1	23	397	419	397	419	0.97
8	14	0.00061	0.076	14.6	3.8	1	22	425	446	425	449	0.90
9	14	8e-05	0.01	17.4	2.6	1	23	453	475	453	475	0.98
10	14	2.5e-06	0.00031	22.1	3.5	1	23	481	503	481	503	0.97
11	14	0.00022	0.027	16.0	6.7	1	23	509	531	509	531	0.98
12	14	1.5e-06	0.00019	22.8	0.4	1	23	537	559	537	559	0.98
13	14	3.2e-05	0.0041	18.6	0.1	1	23	563	585	563	585	0.98
14	14	7.5e-05	0.0094	17.5	0.1	1	23	593	616	593	616	0.97

Sequence Information

Coding Sequence: atgggaacTGTATCTTTGCAGTGTCCTTTCTGTTGCAATGAAAGCTTTGCATCTCGGGAATTGTTAAAAGATCATATTTTTGAGATACTGAACAATTTATCCTGTCCTAATTGCAACATTAGGTTTGAAAACGCCTTCGATATAATAGAACATTTAGATACAGAGTGTGAAAACAATGctgttgtaaatataaaaagtgAAATATCTCAAGGAAATGGAGAAGATAGTAATTTTCAGTCTGACGATATAGAAGATAATCAGCCAAATGATGAAAGTATTCCTGAGAATGTGGAGAGTAATGATCCAGAACTTGCTGCAAAGGATGCTGGTGATGGGGTAACATATATGTGTGTAATGTGTAATGTCCATTTCACATCAATTGAAGATCATTTAGATAAATATCATGATGGAGAGGAGGTTCTGTTGGAAActgaagaaaatgaaaatgaatcagAAAATGCAGCCGAAGTGGATGAATCCGAATTCCTTGGGTTTCCAAATGAAAATTTCGAAATATCTAATGATCCAATAGATAATGATCAATTAGATAGAGCAGAAGATGAACAAGAATACATAGAAACTGAAGAAAGTTCATTTGCCAATAAGGTTAAACTAGGCAAATCTTGGACTTCGGGAAAATTCAGTACCCCCCCTCCCATAACGGAAAATTACTCTCTAGAGAATGGGAAGGTAAAAAGAATCACTGAAGAGGAGGTCGCTGAAATCGATGACATGAATACAATAATTCAAATACATCAGTGTCCGAAATGTTTACTGCAGTTCCCGAAACTTGATCATTATGTCAAACATAAGTGTTATCCAAAGACATCTGAGAAAAAGAATAGGTGTATACATTGTTCAGCAACATTCCAAAGTCACCAATCTCTTACTGCTCATTTGAAAAGTCATTATAAGAGTGACAATGGCGATACGCCCAACAAGGTTATTACTCTTGGACCACACACTTGCGACATTTGTAATACCATGTTTCCATCGTTTAAAAGTCTTCGTCTACATAAAAGGATGCACGATCCGCAAAAAGTTAAACCTATAGAATCACCGGTGAGCCTAAAAACTAACGCTTCTATCGATAAAGTACGTCAAATGTTTGTATGTCACGTTTGCAATAATACTTATGACATAGAATATGAGGAAGTTCATATGAAATCTCATTCCGAGGAAGATAATTTCTATTGCGCTACTTGTAACAGAAAGTTTTTGACGAAAGAAAATCTTGAAATGCACATGAAGGCTCATACCAATACCAAAAAGTTCATGTGTTCTTACTGTAAAAAACCGTTCACAAATCACGAAGCATTAACCGAACACGTTAACAATCAATGTCATAAGAGATCCTACGAATGCCAGTATTGCGGCAGGCGTTTTTCTAGGCCTTGCGAAAAGGTCAAACACGAAAGAATTCATACTGGCGAAAAACCGCATATTTGTCAAATATGCGGCAAAGCTTTTCGAGTCAGTTATTGCCTTACGTTGCACATGAGAACCCATTCGGGATCGAGGCCTTACGAGTGCCCTCATTGTAATAAACGTTTCAAGTCTCATAGCGTTTACAACCATCACTTATTGATTCATTCGGACGTCAGAGCTTACAAGTGTCCTTATTGTCCCAAGGCGTTTAAGACGAGCGTGCAATTGGCAGGTCACAAGAACAGTCATATTAAACCGTTCAATTGTACGGAATGTAATCGACCTTTCGCTTCGTTGTATGCGGTGAGGGCTCACATGGAAACTCATAAAAGAGAAAACAATTTGAAATTTGACTGTTGGCTATGCGGCGCTACTTATGCTAGAGCGTTCGCTCTCAAAGATCATATGAAAACTCAACATGCGGGAGAGAATGTCACCGAAGAGGTGGCGGTGCTAGAAGGAATGGATACTGTCGAAGCTACTACTGAAACTGATCATTACGAAGAAGATACTTCGGCTGATCAAATGCAAGAAGACGAGGTTTAG
Protein Sequence: MGTVSLQCPFCCNESFASRELLKDHIFEILNNLSCPNCNIRFENAFDIIEHLDTECENNAVVNIKSEISQGNGEDSNFQSDDIEDNQPNDESIPENVESNDPELAAKDAGDGVTYMCVMCNVHFTSIEDHLDKYHDGEEVLLETEENENESENAAEVDESEFLGFPNENFEISNDPIDNDQLDRAEDEQEYIETEESSFANKVKLGKSWTSGKFSTPPPITENYSLENGKVKRITEEEVAEIDDMNTIIQIHQCPKCLLQFPKLDHYVKHKCYPKTSEKKNRCIHCSATFQSHQSLTAHLKSHYKSDNGDTPNKVITLGPHTCDICNTMFPSFKSLRLHKRMHDPQKVKPIESPVSLKTNASIDKVRQMFVCHVCNNTYDIEYEEVHMKSHSEEDNFYCATCNRKFLTKENLEMHMKAHTNTKKFMCSYCKKPFTNHEALTEHVNNQCHKRSYECQYCGRRFSRPCEKVKHERIHTGEKPHICQICGKAFRVSYCLTLHMRTHSGSRPYECPHCNKRFKSHSVYNHHLLIHSDVRAYKCPYCPKAFKTSVQLAGHKNSHIKPFNCTECNRPFASLYAVRAHMETHKRENNLKFDCWLCGATYARAFALKDHMKTQHAGENVTEEVAVLEGMDTVEATTETDHYEEDTSADQMQEDEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -