Basic Information

Insect: Crepidodera aurea
Gene Symbol: salm
Assembly: GCA_949320105.2
Location: OX439472.1:21468660-21490281[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.8e-06 0.00073 21.0 0.9 1 23 359 381 359 381 0.98

2 10 8e-06 0.001 20.5 1.9 1 23 387 409 387 409 0.98

3 10 0.073 9.1 8.1 3.8 2 23 721 742 720 742 0.98

4 10 5e-08 6.3e-06 27.5 0.6 1 23 748 770 748 770 0.97

5 10 7e-05 0.0088 17.6 2.6 1 23 780 802 780 802 0.98

6 10 0.011 1.3 10.7 2.4 2 23 1071 1092 1070 1092 0.97

7 10 0.17 22 6.9 0.9 1 14 1098 1111 1098 1112 0.93

8 10 5.5 6.9e+02 2.2 0.3 11 23 1158 1170 1155 1170 0.87

9 10 1.6e-06 0.0002 22.7 4.0 3 23 1276 1296 1274 1296 0.96

10 10 2.3e-07 2.9e-05 25.4 0.9 1 23 1302 1324 1302 1324 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.8e-06	0.00073	21.0	0.9	1	23	359	381	359	381	0.98
2	10	8e-06	0.001	20.5	1.9	1	23	387	409	387	409	0.98
3	10	0.073	9.1	8.1	3.8	2	23	721	742	720	742	0.98
4	10	5e-08	6.3e-06	27.5	0.6	1	23	748	770	748	770	0.97
5	10	7e-05	0.0088	17.6	2.6	1	23	780	802	780	802	0.98
6	10	0.011	1.3	10.7	2.4	2	23	1071	1092	1070	1092	0.97
7	10	0.17	22	6.9	0.9	1	14	1098	1111	1098	1112	0.93
8	10	5.5	6.9e+02	2.2	0.3	11	23	1158	1170	1155	1170	0.87
9	10	1.6e-06	0.0002	22.7	4.0	3	23	1276	1296	1274	1296	0.96
10	10	2.3e-07	2.9e-05	25.4	0.9	1	23	1302	1324	1302	1324	0.98

Sequence Information

Coding Sequence: ATGTACTCGACGGAGCAGACGTGCCTGCTTCTCCGATTGTATTCACAGTTAACTTACAATCGCTTTTTGTTCGCAGATGGACCGTGTCTCGGTGCTACGAGTGCGCCTGAAGAAGTTCACCCCGAGGTATTGATGTGTCAACGCTGCCAGGAACAGTTCACGGAAGTACAAGAATACGTAACGCATAAAGAAGAATGTGACAAAAAGGCTATCAAACACGACGATCCCGCTCATTCAGATCCCGAAGATATGGTGGTGTCCGAAGATGACGATGAGGATGAAGAAACGGGTGGTAAGAAAATTGAAACTATGCGACATCGACAAGATGCCGCTAATAACAATAGTATCGAGGATAATGCTCCGGATGAAAGTAGTCAACGATTAGAGTTTCCGTTTCCTATACCAGCAGCGCCCGGTCATGTGACTTTAGAAGCATTACAAAATACCAAAGTTGCTGTAGCACAATTCGCTGCTACGGCTTTAGCAAATAATGCCGATAATGATGCGGCTTTACAGGAATTTGCTGTATTACAATCAACTTTATTATCATTGCAACACCAACAAGTATTACAACTTCAACTTATTAATCAATTACAACAACAGTTGTCAATAGATCGAACACGAGAAGAGGAAGAAGCTTCTGCAACATCTCCGGCACCATCAGAAAATGAAGTAGAAAATGCACCTGTAGAATCTCCACCGGCGCCTCAAGCTCTGCCTGTAATTTCTCGGGAACCAACACCAGCGTCTCTTCCACCTCCAATCGTACCTCCTGTGCAACCGTCACCTGCAATTCAACCTCCAACGCCTGAAGTAACTGCTCCAGTTACTATGCCTATGCAAATCCATTGTTCAATTTCATCTTCTTTAGCATCTACAATTATTACGCATGATGATCAACCTTCAGAAGAgacaaataatttagaaatgttaCAAAAAAGGGCGCAGGAGGTATTGGATAGTGCTAGTCAAGGTCTATTAGCTACGAATTTAGCTGATGAGCTTGCTTTTAGGAGAAGTAAAGGATCGATGTCTCCATATGATTCAAAAGGAAGAAATGAACCGTTTTTCAAACATCGTTGCAGATATTGTGGTAAAGTATTTGGTTCGGATTCGGCCCTTCAGATACATATCCGTAGTCATACTGGTGAACGCCCTTACAAGTGTAACGTTTGTGGTAGTCGATTTacaacaaaaggaaatttaaAGGTACATTTCCAACGACACAGTCAAAAATTTCCTCATATCAAAATGAATCCCAATCCCGTTCCGGAACATCTAGATAAATATCATCCACCTCTACTAGCACAATTAGGCCAACAATCATCTTTATCTCCTGGAGGACCACCCCATCCTCCCCACTTAGGTTTTCCTACGGGTCCTCATTTTTCTCCTGCATCAATACCCCTATTTAGGCCACAAGGTCCACCCCCACCTGATGTACTTGGCAATAGATTACAATCTTCACCTCATAGGCTATTAGATCCCCCACCTAGATTGTTTCCACCTCATCCATTGTTTTTAAAACGAGAACAAGAAATTCCTGCAGATTTAAGTAAACCACCAAGATCCCCTTCTCCTaaccaagaaaaaataaactcaTCGGAAATGGAAGATAAACGAGATTCTGAAAATGTCGATGAAAATAAACCATTAGTTAGTACCCCTGACGTAACACCAAAACAAGAAACACATTTCACTGATAATGAAAACGAAAACGAACAAGAAAGGTATTCTATTCCTTTACCCTACGACGAGTGTAGTAATAGTACTAAATATTCCAACGAAGATATGTTGGATCAAAGTCTTGGTGGTGAACTAAAcgaaaatattcaaaatgaacCCGAAAATTTATCTACAAATAACTCAATCATAGGTCCCTTAAGCATATCAACTATCGGCCAGAGATTGCCGGCAAATTTTTCTTTTGGCCACGCCAGCTCTCCTCCAAGCAGTACTTCTTCTGGAAGTTTAGGTCCATTTCCATGTAATCCTTTAGCTGACATAACGAAGGATCCTTCACTTTATACGAATCTATTACCTAGACCAGGAAGTAACGACAATTCGTGGGAAAGTTTAATCGAAGTAACTAAAACTTCCGAAACTAGTAAACTTCAACAATTAGTTGACAATATTGAACATAAATTATCAGATCCGAACCAATGTGTTATATGTCATCGAGTGTTATCATGCAAAAGTGCTTTACAAATGCACTACAGGACTCACACCGGTGAAAGAccttttaaatgtaaaatttgtggTCGAGCTTTCACTACCAAGGGTAACCTAAAAACTCACATGGGAGTTCACCGCGCGAAGCCTCCAATGAGGGTCCTACACCAGTGTCCTGTTTGTCACAAAAAGTTCACTAATGCCTTAGTGCTTCAACAACATATCCGCCTACATACCGGTGAACCAACTGATCTCACTCCGGAGCAAATTCAAGCAGCCGAAATCAAAGACTTTCCTTCACCCGGTGGGTTTCCCAATCTACCAAATTCCATTCATCCATTCCTTAGTCAAGGTTTTCACCCACCCGGACTTTCTCCATTGGGTCATTCTGGAATCCCATTAAACATGCGATGTGACAGGGATATCAAGTCAGAACACGGGAGTATGGACGATGAcgacgatgacgatgacgacGATGGAATGAGTTCTATAGAAAATCAAAATATGCCTCCTTTTTCCTCATCGCCATCGGACGTTCAACATTCTGGTATGCCAATTAATACGATTGCGTCCCAGTTTTCTGGAAGCGGACTCAGTTGTTCAGCAGAAGATTTATGTTCTAATCGCACGACAGCTTCCACACCGCCTCCTATGCAGAATGGTGACAAATCTCCTAGTCAATCTGGAGTTACTAGTCCAGGGAGCACCGAGTTACGATCTTCACCCAATCACACTCCCGTCCAgATTCCTCGACCTCCGTCATCACAACCAGCTAGTAGTCCGTCACCCTCCGACAACTCAATGGGAGCTCTCGATTTAACACCAAGAAGTCAACCTCCGATAACGAGTCCAGGACCTTCGACTCCGAGTAGTGCACCACCGCTTTTTCCTTCATTTGGACTTTTACCTTCGGGCGGTCAATCTCCGCTAATATCGTCAGCGCTGTCATCCCTCACGTCATCAGTTCTGACGTCAACTTCATTTAGTCCCCTCAGGTTAGCCGTTGGGCCCATTGGAactttagGTCGTGGGAACACAACCTGTAACTTATGCTTCAAGACCTTCGCGTGTAATTCTGCCCTCGAGATCCACTATCGAAGCCATACCAAAGAACGACCCTTTAAGTGTACCGTCTGTGAAAGAGGATTTTCCACCAAGgatggtTGTCTTTGTACGCAGAGGCGTATCCAGGATGAAGTAGATCACTGGAGGGCGCAAAATCAAAAATCAGCCCTCTTCAACTCCATTCCCTCCATTTTTTGCTTACCGATGACGCCTGGATACGCCTCGTTGAGGACAAAAAAGGCGGGTAACATGAAGCAGCACATGCTCACCCACAAGATCAGAGACATGCCGCAGCACATGTTCGAGAATAAACCGCCGAATTTGAGCGGAGACGAGTCCACTCCTTTACCACCGAGTCTGCCTAAGTTGGAAGCACCGTGTAGCGATGGAGAGCGTGAGCAACAGCCGTCACAGCAACCTTTGGCTGCTCAACCTCCTCAGAACATTCACCTACCGCAGCTTCCACCGCAACTTCCGCCACAGCCTGAGAAACACGAAGTGGAATCGCAACAAATCAAAAGAGAGCCTACTGAGACTGAACTACCTTTACCAAAACGTCCTCCTAGCTTACAATCAAGTAAGCATTTGTGCCACGTATGCAATAAGAACTTCTCGTCCAGTTCCGCTCTTCAAATCCACATGAGGACTCACACTGGAGATAAGCCCTTTAGATGTACCGTATGCCAGAAGGCCTTCACCACCAAGGGCAACCTCAAGGTTCACATGGGCACGCATATGTGGAGCAACGGGGCATCTCGAAGAGGTCGGCGCATGTCCCTAGACCTTCCTCCCATCCCCATGACCCCCAAGGATTCCGAATTTCTGCAGCGGAGGCCAGACCTCTTTTACCCGTACCTCCCGGCTCCATTCCTTAACGGAATGCAACAAAagCTTAACGAAATTACAATGGTCCAAAATAACCACAACGGACTGACAGGCGCCGGGAAGTACAGCGGTCTCCTTGGCTTCGGCTATCCGCCGCCAGAAGCAATCCGATCTCAGGCGAGCTCTCCCGAACGCACCGAGAGACCGCCCAGCCACGAACCCGACACCAGAGGGCTCTGGGATCTCCACTTCGAGCGAAAGAGCGCCGTGGATGCGCCCAGGGAAGATCTCCTGCCGCCGACGGCCAACAGGGAAGGCTTGGCCGCTTGA
Protein Sequence: MYSTEQTCLLLRLYSQLTYNRFLFADGPCLGATSAPEEVHPEVLMCQRCQEQFTEVQEYVTHKEECDKKAIKHDDPAHSDPEDMVVSEDDDEDEETGGKKIETMRHRQDAANNNSIEDNAPDESSQRLEFPFPIPAAPGHVTLEALQNTKVAVAQFAATALANNADNDAALQEFAVLQSTLLSLQHQQVLQLQLINQLQQQLSIDRTREEEEASATSPAPSENEVENAPVESPPAPQALPVISREPTPASLPPPIVPPVQPSPAIQPPTPEVTAPVTMPMQIHCSISSSLASTIITHDDQPSEETNNLEMLQKRAQEVLDSASQGLLATNLADELAFRRSKGSMSPYDSKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPYKCNVCGSRFTTKGNLKVHFQRHSQKFPHIKMNPNPVPEHLDKYHPPLLAQLGQQSSLSPGGPPHPPHLGFPTGPHFSPASIPLFRPQGPPPPDVLGNRLQSSPHRLLDPPPRLFPPHPLFLKREQEIPADLSKPPRSPSPNQEKINSSEMEDKRDSENVDENKPLVSTPDVTPKQETHFTDNENENEQERYSIPLPYDECSNSTKYSNEDMLDQSLGGELNENIQNEPENLSTNNSIIGPLSISTIGQRLPANFSFGHASSPPSSTSSGSLGPFPCNPLADITKDPSLYTNLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEIKDFPSPGGFPNLPNSIHPFLSQGFHPPGLSPLGHSGIPLNMRCDRDIKSEHGSMDDDDDDDDDDGMSSIENQNMPPFSSSPSDVQHSGMPINTIASQFSGSGLSCSAEDLCSNRTTASTPPPMQNGDKSPSQSGVTSPGSTELRSSPNHTPVQIPRPPSSQPASSPSPSDNSMGALDLTPRSQPPITSPGPSTPSSAPPLFPSFGLLPSGGQSPLISSALSSLTSSVLTSTSFSPLRLAVGPIGTLGRGNTTCNLCFKTFACNSALEIHYRSHTKERPFKCTVCERGFSTKDGCLCTQRRIQDEVDHWRAQNQKSALFNSIPSIFCLPMTPGYASLRTKKAGNMKQHMLTHKIRDMPQHMFENKPPNLSGDESTPLPPSLPKLEAPCSDGEREQQPSQQPLAAQPPQNIHLPQLPPQLPPQPEKHEVESQQIKREPTETELPLPKRPPSLQSSKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEITMVQNNHNGLTGAGKYSGLLGFGYPPPEAIRSQASSPERTERPPSHEPDTRGLWDLHFERKSAVDAPREDLLPPTANREGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01047711;
90% Identity: iTF_00792417;
80% Identity: -