Caur017212.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- -
- Assembly
- GCA_949320105.2
- Location
- OX439474.1:30261757-30264201[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00061 0.076 14.6 1.9 1 21 144 164 144 165 0.94 2 11 0.00078 0.098 14.3 3.2 2 22 172 192 171 192 0.94 3 11 0.028 3.5 9.4 0.6 1 19 214 232 214 237 0.89 4 11 0.0039 0.49 12.1 2.4 1 23 247 269 247 269 0.98 5 11 7.5e-06 0.00094 20.6 0.2 2 23 276 297 276 297 0.96 6 11 6.3e-08 7.9e-06 27.1 0.8 1 23 303 326 303 326 0.97 7 11 6.2e-06 0.00078 20.9 0.9 1 23 334 356 334 356 0.97 8 11 2.3e-06 0.00029 22.2 2.5 1 23 362 384 362 384 0.96 9 11 1.6e-05 0.0021 19.6 3.7 1 23 390 413 390 413 0.98 10 11 0.044 5.6 8.7 4.8 1 20 426 445 426 448 0.95 11 11 5.9e-06 0.00074 21.0 2.1 1 23 454 477 454 477 0.97
Sequence Information
- Coding Sequence
- ATGAATGGCAACTATTGTAGCATTTGTCTCGACAATACACAATTGACTACTCGTTTTGGTGATTTAGATGAGAATAACATTAATTGGTTAGCAAAGTTAAAAACTATTGTACCAGATTTGcaaGAAGAATCTGAAGAAAATTTAATATGTAATGTATGCACAAAACAGGTAAATGAATTTTTAGTGTTTAGAGAAAGGGTACAGAATCTTGTTAATAGACTAAAACATGTAGAAAAGAAAGAGGAACCGTTTTTTGAAGAGAATAGTTATTCAGAAAGTCCAGTAGCTCTAAATGAAGTTAGTGACAATGAAGAGAGTAATGATAGCAGCAGATCTGATATAAGTGAATCTAAAGATAagctaatttatttaaaatgtgtTGATGTTAGAGAAGAATCAAATTTAGATAAGTTGAGAAAAGATGATCTTTTTAGTTGTAAAAAGTGTAAAGAAGAATTTAATACCAAAAAAGACTTGAACTTGCACAAAAAACTGtgcaacaaaaaaattttaacttgtTATACCTGTCATAAAACTTACAATACAAAGACGACTTTGAAGATACACCAAAAAAGGTGTGGTAGTGATGAAAACgaggaaaaaaaatctaaaaaaagagGTAGGAAATCAACTAGGAGTTACACATGTGAAACTTGCGATCAAGTGTTTAATTTAGTGAAAGACTTAGTGGCACATTGTAAAGGAATTCATGGTGTTGAAGAGAAATTAGTTAAACCATATTCTTGTAACCAGTGTACCCAAAGATTCAGGACCTATGCAGgaTATGACCAACATTTGAAATACCATAGCAGAAGTAGAGATAACGTTTGCAGCTTGTGTGGTAAACGATTTATAACCAAAAGCGAACTAATAGTTCACGAATATACCCATTTCAATCGCCGAAACTACAAGTGCACAACCTGTGGCAAAGCGTTCAACACTAACAAAAACCTCAAAACTCACATTTTAGTTGTCCATACAGACAGATCAGCCTGGAAGTTCGCatgtaacgtttgtgaaaaacGGTTTCCCCAAAAAGGCAACTATGACCAACACATGAAAAGACATGCCGGTGACAAGCAGCATATCTGTCACATCTGTCAAAAACCGTTTATAACTAGCAGCGAGTTGAAACGTCATGTGAATCTTCATTCGAACGTCAAAGCTTTTACTTGCGAATACTGCCAAAGAGAGTACAAAACGCAGCGTACACTAAAAACACATTTACGTAGATCGCACTCAGTCGGAGATAAACTGCcggaaaaagaaaagaaatacGTGTGTCATATCTGTCCGAGTCAATTTTAcgataaacaaaaattatccagACATTTATACTGCCATTCTGGAGTGAAACCTTTCCCATGTACTGCCTGCGAGAAAAAATTCGCCGACAAATCATATTTGAAACATCACATGAAGGTTTCACATAATATGTTGTATTTGACAGAGACTGTGAAGTATGACAGCTCAAGTGAGTTGAAGTATGACAGTACTAGCGAATTGAAGTATGACAGTACTAGCGAATTGAAGTACGAGGTTCCTGAGCAGCTTAAATTCGAATTTAACATTATTAAGTAG
- Protein Sequence
- MNGNYCSICLDNTQLTTRFGDLDENNINWLAKLKTIVPDLQEESEENLICNVCTKQVNEFLVFRERVQNLVNRLKHVEKKEEPFFEENSYSESPVALNEVSDNEESNDSSRSDISESKDKLIYLKCVDVREESNLDKLRKDDLFSCKKCKEEFNTKKDLNLHKKLCNKKILTCYTCHKTYNTKTTLKIHQKRCGSDENEEKKSKKRGRKSTRSYTCETCDQVFNLVKDLVAHCKGIHGVEEKLVKPYSCNQCTQRFRTYAGYDQHLKYHSRSRDNVCSLCGKRFITKSELIVHEYTHFNRRNYKCTTCGKAFNTNKNLKTHILVVHTDRSAWKFACNVCEKRFPQKGNYDQHMKRHAGDKQHICHICQKPFITSSELKRHVNLHSNVKAFTCEYCQREYKTQRTLKTHLRRSHSVGDKLPEKEKKYVCHICPSQFYDKQKLSRHLYCHSGVKPFPCTACEKKFADKSYLKHHMKVSHNMLYLTETVKYDSSSELKYDSTSELKYDSTSELKYEVPEQLKFEFNIIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -