Caur028474.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- -
- Assembly
- GCA_949320105.2
- Location
- OX439477.1:1575939-1627782[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.6e-05 0.0046 18.5 0.4 1 23 113 135 113 135 0.98 2 12 0.01 1.3 10.7 0.3 1 23 142 165 142 165 0.95 3 12 3.9e-07 4.9e-05 24.7 3.6 1 23 189 211 189 211 0.98 4 12 0.0067 0.84 11.3 0.0 1 23 224 246 224 246 0.94 5 12 0.14 18 7.2 0.0 1 23 252 275 252 275 0.93 6 12 0.032 4 9.2 1.9 2 19 283 300 283 301 0.96 7 12 1e-05 0.0013 20.2 4.2 1 23 310 332 310 332 0.97 8 12 0.0015 0.19 13.4 0.3 2 23 338 359 337 359 0.97 9 12 5.3e-06 0.00066 21.1 0.4 1 23 367 389 367 389 0.98 10 12 0.0023 0.29 12.8 0.2 3 23 397 417 395 417 0.97 11 12 7.2e-05 0.0091 17.5 0.3 1 23 423 445 423 446 0.95 12 12 0.043 5.4 8.8 1.8 1 23 460 482 460 482 0.96
Sequence Information
- Coding Sequence
- ATGGGGGATGGTTTGGTAattCACGCTTATATACCAGAAGCAGATGGTCTTGAAGATGAAGAAATCCAAACTATGGATGACCTTGGTGATGGGTCcgacaaaaagaaaaaacataaaCAGCTTGGAAAGAagaggaaaaagaaaattaaagaagaatttgATGCCTACGAAGAAGACCTTGGTGCATCTAGTTCCAGAACATATAACTATGTAGACGAAGACATGAAGCTTATGGAACAGATGTCGAACAATGTCAAGCACGATTACAACTACATTCAAGAGGATGAACAACAACCATCAGAAACTCGGTATCCCATTACCGATCCGAGAAAACCTTTTGTCTGTCAACATTGCGGTGTAGGATTTGCTAGGGAAAAGGCCATGATGTCTCATATAAGGATGCACTCGGAAGGTGACAGCCCGTTCGAGTGTCAAAAATGTGGGGAAATGTTTTGGGACCTGATGCAAATGAAAGAacatattaaagaaaaacatggAGAAGTTGACGATTACGAAGATGACGATGATGAAGACTATTCTGAAGAGGACACGAAATACGGAACTTATTATTGTTCGACTTGTGGACTCTCGTTTCataggcaaGACAATCTTCGAAGACACCAAAGGATTCATGTTAAAGAAGAATATGTAAACGAACACGAGTTTGGTCATATTTGTAATGTTTGCGGAGAGTCGTTTCAAGAAGCTCTGGATTTATTGGCTCATGCGGAAGTTCACGCTAGGACATTTGAATATAGGTGTATGATATGTGGAGAAATTGCTGAGGATGAAAATTTATTAGCGGTACATGTTCAGgctAAACATGGCAAAAATCTACCTCCAAATACTTGTATGCTTTGTGGCCGAAGTTGTAAAGATCGCCGAACGCTTCTCAAACACTCTTGGGAACATTCTAAGGAAAAGGTGTTTGCTTGCACGAAATGCGATAAAACCTTCCACAATAAAGCTAGATTGAAACGTCATATGCTGTCACACAGAAACAAAGTGGTGACATGCGATGTTTGTGGAGAGGAGTTCCCAGATGGTAGGTCGTTGATGAATCACAGACATAGTCACAGTAGCGTATCCGGTAGGCAATTTCCGTGCAGAGAATGTGGAAAAACGTTTGGTTCTAGGAGTTCGCAACAGATACATATTAGAATACATACGGGTGAAAGACCTTATGGATGCCGGTTTTGTTGGAAGGCGTTTGCTGATGGAGGAACTCTCCGAAAACATGAACGGATTCACACTGGGGAAAAGCCTTATGCTTGTGCCGTTTGCCCACGAGCCTTTAACCAACGAGTCGTCTTAAGAGAACACATAAGGTCCCATCATTCAGGACCTGATCCCAAATATTCTAACAGcaTGACACCTTATTGTTGTTCGGTGTGTTCAGATATGTTCGCAACTTCCCAGGATTTAATTTTACATCTAATTCACCACTGCGACATGAACACGGCGATGAAGCGACAGCCGCAAGTCGGTCCTAGGAAGTACAAACGAAGAAGAAAGCTTAAACCTCATGAGCTTGAAATGATTACCAATAGGATAGAAGATGGGGAAAATGAACAGTCAGAgGTCGATAAATATCCCAGCACACGGCCTGCTGCTATCCaaacttgtgtaaattttattCACAAGTACAGCAATAGCATCACTGGTCGATTTTCCATTCCTAAATCCGAATTGGAAGTTGGATAg
- Protein Sequence
- MGDGLVIHAYIPEADGLEDEEIQTMDDLGDGSDKKKKHKQLGKKRKKKIKEEFDAYEEDLGASSSRTYNYVDEDMKLMEQMSNNVKHDYNYIQEDEQQPSETRYPITDPRKPFVCQHCGVGFAREKAMMSHIRMHSEGDSPFECQKCGEMFWDLMQMKEHIKEKHGEVDDYEDDDDEDYSEEDTKYGTYYCSTCGLSFHRQDNLRRHQRIHVKEEYVNEHEFGHICNVCGESFQEALDLLAHAEVHARTFEYRCMICGEIAEDENLLAVHVQAKHGKNLPPNTCMLCGRSCKDRRTLLKHSWEHSKEKVFACTKCDKTFHNKARLKRHMLSHRNKVVTCDVCGEEFPDGRSLMNHRHSHSSVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSNSMTPYCCSVCSDMFATSQDLILHLIHHCDMNTAMKRQPQVGPRKYKRRRKLKPHELEMITNRIEDGENEQSEVDKYPSTRPAAIQTCVNFIHKYSNSITGRFSIPKSELEVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -