Caur032749.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- znf711
- Assembly
- GCA_949320105.2
- Location
- OX439479.2:20236045-20258659[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.9e-06 0.0005 21.5 0.5 1 23 10 32 10 32 0.98 2 12 4e-07 5e-05 24.6 2.0 1 23 38 60 38 60 0.98 3 12 0.0028 0.35 12.5 2.5 1 23 66 89 66 89 0.97 4 12 0.078 9.8 8.0 1.7 3 19 269 285 267 288 0.91 5 12 4.9e-06 0.00061 21.2 1.0 2 23 329 350 328 350 0.97 6 12 8.7e-06 0.0011 20.4 2.8 1 23 383 405 383 405 0.98 7 12 2.4e-06 0.0003 22.2 1.1 3 23 413 433 411 433 0.98 8 12 2.8e-05 0.0036 18.8 0.6 3 23 442 462 440 462 0.97 9 12 0.022 2.7 9.7 0.4 1 23 468 491 468 491 0.93 10 12 3.5e-05 0.0044 18.5 1.3 2 23 661 683 660 683 0.95 11 12 0.00055 0.069 14.7 1.5 3 23 691 711 689 711 0.96 12 12 1 1.3e+02 4.4 6.9 3 23 714 735 712 736 0.94
Sequence Information
- Coding Sequence
- ATGAAATACCACGAAGGTGATAGGAGGTACAAATGTCAAATATGTCCGAAggctTTTATAACTTCGTATAGACTTAAAGAACACATAAACTTACACAACAACATAAAAAATTATGCCTGCAAAACCTGCAATAAAAGATTTGGAACTTCAACAAACCTCAGGAGACATATGATCACTCATAATAATCAGAGACCTTACATGTGTCCCTACTGTTCCAAACATTTCCAAACGCTAGATTTGAGCAGGCGTCATATTAAGAGTGTTCATAAAAAGGATGTTTTACCGAAAATAGATACCGTGATGGAAGCTTTAAACGAAAATAACGATAATAATGCTTTATGTCAAGGTACCAGCGTGATAATATGTAACAATAAAAACGAAGAATCAAATTTAGTAACAAATGCGGAAATTGGAACAATTCAACACTTTGTACCCGAAGAAAATTCTCAACCAACTCAGATGATAAATCCTTCGGCATTGCAGGACCCCAACACAGGTTTACAGACGTTTTATGTCAATTTGGAAGATCTGCAACTTATTGATAATTCTGGAATAAGTTTAAGTTCTTTGGTGGAGAACACTGGGAATGAAGAAAACTTTCAAATAACCACCAACGACCCTCACGAAAAAGACCACAACCAACAAAATCAAGTATTAATGTACACCAGCTCCACCGAACCCTCAACCACCCtcaatttggcaacaccgcaCGCGTCAGATGTGATCTTTGACGGCAACTCCGTAGTCCAAACGTCCGTAGGTCTAAACGAAACACGAAATATCTTCGATGATGCCAGTATAATCTGCATGAACTGTAACAAGATGTTTTCCAGTTTCATCTACTTCCAAAAACACAATTGCAGTAAttccaataaagaacataattcGGAAAATATTCCGAAAATAATGAACGAACAGTCGAATTTTGAAAAAGAAATTCCCATCGTCGAACCCGAACAACCTAAGAAAGATTCCGAAGAGTTGGAATGCCCGGTGTGTAAGAAAgtctttaaaaagaaaatactttATAGGAGGCACATAAAAATGCATTCTAACGTAAAGCGTTCGAAGTGCAAGCAGATTATTTCGGATAAAACGGAATATTTGGAGCGAGCGATTCATAATAGTTCAATCGCATCAAGTTTGTATCATTGCGTGTTTTGCGCGAAGGAGTTTAAAAAGCCTTCGGATTTGaaacgcCATATTCGTACGCACACAGGAGAAAAACCTTTCGGCTGTGACATTTGCGATAAAAAGTTTTCTCTTAAATCGACCCTGCAGTCTCATATCAAAACACACGATCCGAATCACAAACAATTTGGCTGTGacatttgcaatacattttattcTTCAAAAAGCAGCTTGAAAGTCCATATGACCATACATACAgGACAAATGCGCTATTCTTGTTCGGTTTGCAAAGCAGAATTTAGAACTCTCAGTACCAAAAAATCTCACGAAGCAGTAGGACATCGACGAATTTTCAAGAAAACACTCATAAAAGCAACCAAGAACAGACTTACTGATATTTTAGAAACTTTATCGTCAGATAAAGATGAAATGCGAAACAACGAAGTTCCTGAATTTGTGAATCTTCAAACCCTTAATTTGGTTATGGATCAAAacaatttagcTACTCAGACTCAAACTTTAGACCTTCCATCGCAAATAGTGAACCTAGATATACCTCCCGAAACAATTATATCCACCATTACTGAAGTTCAGTCGCCCGATCCGTCTAATTTGCTGCAGCAATTACAGATGTCGGATATGGTGCTTACCACCAACGAAACCGAAGAGGTGCCATCTCTGATATTAGACGATGTCAGTTTTTTGGACTTAAGCGCCGGTACTAATAATCTGCAGATAATTTCTTTGCCAGAAGTTGACGGGAGAGTTACTATTAGCATTAAGGAAAATGTAGAGAAAAGTCAAATGGAAGTTCCCCCTAAACCGGATAAGGAAAAACCCAAATCCGTCGAATGTGACATATGTCATAAGACTTACGCTTCTAAAGATGGTTTGAGGAAACACAAGAAGAACGTGCATGGTGGCAATAAGAATTTCGGATGTGAAAAGTGCGACGAAAAGTTTGATACGAAGGAGAAACTTCAGAACCACAAAAAAGATCATTGTTTGTGCATGTTGTGTGCTATGAAGTTTAGCGAAGAAAAAAGCCTTAAGAATCACATGAAAAGTTGCCATCATGGGAATGAAGCCTCGAAAGAACAGACCAGTGCCTTGTTAAACTTAAAGTTAGATCCTTTATTCAACAATTTATTCGtgcttaaaaaattataa
- Protein Sequence
- MKYHEGDRRYKCQICPKAFITSYRLKEHINLHNNIKNYACKTCNKRFGTSTNLRRHMITHNNQRPYMCPYCSKHFQTLDLSRRHIKSVHKKDVLPKIDTVMEALNENNDNNALCQGTSVIICNNKNEESNLVTNAEIGTIQHFVPEENSQPTQMINPSALQDPNTGLQTFYVNLEDLQLIDNSGISLSSLVENTGNEENFQITTNDPHEKDHNQQNQVLMYTSSTEPSTTLNLATPHASDVIFDGNSVVQTSVGLNETRNIFDDASIICMNCNKMFSSFIYFQKHNCSNSNKEHNSENIPKIMNEQSNFEKEIPIVEPEQPKKDSEELECPVCKKVFKKKILYRRHIKMHSNVKRSKCKQIISDKTEYLERAIHNSSIASSLYHCVFCAKEFKKPSDLKRHIRTHTGEKPFGCDICDKKFSLKSTLQSHIKTHDPNHKQFGCDICNTFYSSKSSLKVHMTIHTGQMRYSCSVCKAEFRTLSTKKSHEAVGHRRIFKKTLIKATKNRLTDILETLSSDKDEMRNNEVPEFVNLQTLNLVMDQNNLATQTQTLDLPSQIVNLDIPPETIISTITEVQSPDPSNLLQQLQMSDMVLTTNETEEVPSLILDDVSFLDLSAGTNNLQIISLPEVDGRVTISIKENVEKSQMEVPPKPDKEKPKSVECDICHKTYASKDGLRKHKKNVHGGNKNFGCEKCDEKFDTKEKLQNHKKDHCLCMLCAMKFSEEKSLKNHMKSCHHGNEASKEQTSALLNLKLDPLFNNLFVLKKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -