Basic Information

Insect: Crepidodera aurea
Gene Symbol: -
Assembly: GCA_949320105.2
Location: OX439473.1:18638491-18641584[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 3.1e-05 0.0039 18.7 5.0 1 23 141 163 141 163 0.99

2 11 8.5e-06 0.0011 20.4 2.2 1 23 168 190 168 190 0.99

3 11 0.0082 1 11.1 6.2 1 23 197 219 197 219 0.95

4 11 3.2e-05 0.004 18.6 2.2 1 23 225 247 225 247 0.98

5 11 2.4e-05 0.003 19.0 3.0 1 23 256 278 256 278 0.96

6 11 3.9e-05 0.0049 18.4 2.8 1 23 284 306 284 306 0.97

7 11 0.0079 0.99 11.1 0.6 1 23 312 334 312 334 0.98

8 11 2.4e-08 3e-06 28.5 0.6 1 23 340 362 340 362 0.98

9 11 5.1e-05 0.0064 18.0 0.5 3 23 370 390 369 390 0.99

10 11 1.6e-05 0.002 19.6 0.3 1 23 396 418 396 418 0.98

11 11 5.9e-06 0.00074 20.9 3.0 1 23 424 446 424 446 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	3.1e-05	0.0039	18.7	5.0	1	23	141	163	141	163	0.99
2	11	8.5e-06	0.0011	20.4	2.2	1	23	168	190	168	190	0.99
3	11	0.0082	1	11.1	6.2	1	23	197	219	197	219	0.95
4	11	3.2e-05	0.004	18.6	2.2	1	23	225	247	225	247	0.98
5	11	2.4e-05	0.003	19.0	3.0	1	23	256	278	256	278	0.96
6	11	3.9e-05	0.0049	18.4	2.8	1	23	284	306	284	306	0.97
7	11	0.0079	0.99	11.1	0.6	1	23	312	334	312	334	0.98
8	11	2.4e-08	3e-06	28.5	0.6	1	23	340	362	340	362	0.98
9	11	5.1e-05	0.0064	18.0	0.5	3	23	370	390	369	390	0.99
10	11	1.6e-05	0.002	19.6	0.3	1	23	396	418	396	418	0.98
11	11	5.9e-06	0.00074	20.9	3.0	1	23	424	446	424	446	0.99

Sequence Information

Coding Sequence: ATGAAAGATTTATTTACACTCAAAATAGCTAAAGATAACACAACTCTTGTagattttattagaaaaatgaCTGATCtaaagCTATTATATTCAAAGAACTTGCCCTCAAATATATGCAGTGAGTGCACTCAAGGGGTTTTTGGTGCATTTGACTTTGTAGAAATTTGCATAGCTTCAGATGCTCGGCTTAGAACACTGGAAACAAGAAGAATGTTAAGAAAAATTGAAGCTGAAGCTTTGGAACAAGAAGAGGATGACGAAGAAATGATTGTAAAATGTGAAACTTTAACTGTAGAAAATGTATCAGAAGATGAAACTATAGAAAAACGACAGTTTGTAAATAACGTAGAATtatttgaagaaaaagaaaatcccCTTCCCACAGAATTACAGTTTACTATAGcaagaacaaaaaataaatacaaatgcGATCAATGCAATTACAGATTCAATAATAAAACGAAATTTATAAGGCATCAAAAAAGCCATCAAGAACATCCTTATAAATGTACCGAGTGTTCTTTAAGTTATAGGAAAAAATCACTGTTGAATTTACATTTAAGATCTCACAAAAACGAGGATAAAAAATTTTGCTGTAAAGACTGCACAAAACAATTTAGTTTTGAATATTTGCTGAAACAACATGAATTCAAACATCAAGATGTTAAACCATTTCCATGTACTAAGTGTGATAAAGGGTGTTTAACAGCTGAAAGTCTCAGACGTCATATGAGAACGCACGatgaaaattatgaaaaaaaagtccATATTTGCCACTTATGCAACAAATCGTTTGCTTATCCCAGTTTTCTAGCAGAGCACATGAAATATCATACTGGGGAAAAACCACATGTTTGCAATGTGTGTGGAAAAAGTTTTCGTCAAAGCGGTGCTCTTCATTTTCATCAAAGGATCCATACAGGATATAAACCTTTCCCATGTAGAGTTTGTAAAGAGAATTTCATGGCAAGAAGTATTTTAAAAGTTCACATGAGAAAACATACAAACGAACGCCCTTACATATGTGATATTTGTGGAATCTCCTTTAGGCAGTCATCAGACTTAAAAAGTCACAGACGAACACATACTGGGGAAAAATTAGTTTTGTGTACAGTTTGTggcaaaaaattatctacaaCAGGTCAACTAACAATCCACCTACGAAGCCATACAGGTGAAAAACCCTATACATGCCCAACCTGTAACAAATCTTTTGCTGCCAAAACTATGCTCGTTACCCACGAAAGAATACATACAGGGGAAAGACCCTATGTTTGCAAAATTTGCAACAAAGGATTTAGCCAGAGTTGTACTTTAACTTCTCATGCAAAAACGCATGATAGGAAGTTAaccaaagaaaacaaaataaagaaagAAGCAAAGATTAAAGGAgcaAAAAATTCCAGTGGTCGTGGTAGTTTGATGAAAAAAATCGCTGACTTGCAGAAAAAAACGATGCAATTGGAGCAAGTCGAATGCGAGGAATTTGTGGTAGACGATATGACAGAAATTGAAAGTGAAGAAAGACCGCAATTCACTGTTATTTTACCTGAAACTACAGATGAACATAATATTGCAACCAAACCTAAATAA
Protein Sequence: MKDLFTLKIAKDNTTLVDFIRKMTDLKLLYSKNLPSNICSECTQGVFGAFDFVEICIASDARLRTLETRRMLRKIEAEALEQEEDDEEMIVKCETLTVENVSEDETIEKRQFVNNVELFEEKENPLPTELQFTIARTKNKYKCDQCNYRFNNKTKFIRHQKSHQEHPYKCTECSLSYRKKSLLNLHLRSHKNEDKKFCCKDCTKQFSFEYLLKQHEFKHQDVKPFPCTKCDKGCLTAESLRRHMRTHDENYEKKVHICHLCNKSFAYPSFLAEHMKYHTGEKPHVCNVCGKSFRQSGALHFHQRIHTGYKPFPCRVCKENFMARSILKVHMRKHTNERPYICDICGISFRQSSDLKSHRRTHTGEKLVLCTVCGKKLSTTGQLTIHLRSHTGEKPYTCPTCNKSFAAKTMLVTHERIHTGERPYVCKICNKGFSQSCTLTSHAKTHDRKLTKENKIKKEAKIKGAKNSSGRGSLMKKIADLQKKTMQLEQVECEEFVVDDMTEIESEERPQFTVILPETTDEHNIATKPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01047675;
90% Identity: -
80% Identity: -