Basic Information

Insect: Crepidodera aurea
Gene Symbol: -
Assembly: GCA_949320105.2
Location: OX439475.1:16946305-16963115[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00087 0.11 14.1 2.1 1 23 571 593 571 593 0.98

2 16 0.0026 0.33 12.6 1.2 2 23 599 620 599 620 0.98

3 16 0.0097 1.2 10.8 4.6 1 21 626 646 626 648 0.94

4 16 0.00076 0.095 14.3 4.9 1 23 654 676 654 676 0.98

5 16 0.0071 0.9 11.2 1.6 1 23 683 705 683 705 0.97

6 16 0.00028 0.036 15.6 0.3 2 23 712 733 711 733 0.97

7 16 0.00034 0.043 15.4 0.4 1 23 738 761 738 761 0.97

8 16 0.00017 0.022 16.3 1.7 2 23 765 786 765 786 0.97

9 16 7e-05 0.0088 17.6 0.4 3 23 794 815 793 815 0.96

10 16 1.3e-06 0.00016 23.0 0.3 2 23 823 844 822 844 0.98

11 16 2.8e-05 0.0035 18.8 2.3 1 22 848 869 848 870 0.90

12 16 0.00013 0.017 16.7 2.7 1 23 876 898 876 898 0.98

13 16 0.089 11 7.8 5.7 1 20 904 923 904 926 0.92

14 16 0.011 1.4 10.6 2.8 1 23 932 954 932 954 0.99

15 16 0.011 1.4 10.7 3.7 1 22 960 981 960 984 0.90

16 16 0.011 1.4 10.6 0.5 1 23 992 1015 992 1015 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00087	0.11	14.1	2.1	1	23	571	593	571	593	0.98
2	16	0.0026	0.33	12.6	1.2	2	23	599	620	599	620	0.98
3	16	0.0097	1.2	10.8	4.6	1	21	626	646	626	648	0.94
4	16	0.00076	0.095	14.3	4.9	1	23	654	676	654	676	0.98
5	16	0.0071	0.9	11.2	1.6	1	23	683	705	683	705	0.97
6	16	0.00028	0.036	15.6	0.3	2	23	712	733	711	733	0.97
7	16	0.00034	0.043	15.4	0.4	1	23	738	761	738	761	0.97
8	16	0.00017	0.022	16.3	1.7	2	23	765	786	765	786	0.97
9	16	7e-05	0.0088	17.6	0.4	3	23	794	815	793	815	0.96
10	16	1.3e-06	0.00016	23.0	0.3	2	23	823	844	822	844	0.98
11	16	2.8e-05	0.0035	18.8	2.3	1	22	848	869	848	870	0.90
12	16	0.00013	0.017	16.7	2.7	1	23	876	898	876	898	0.98
13	16	0.089	11	7.8	5.7	1	20	904	923	904	926	0.92
14	16	0.011	1.4	10.6	2.8	1	23	932	954	932	954	0.99
15	16	0.011	1.4	10.7	3.7	1	22	960	981	960	984	0.90
16	16	0.011	1.4	10.6	0.5	1	23	992	1015	992	1015	0.88

Sequence Information

Coding Sequence: ATGGAAAGCAGATTCTACTATTTCGCTGGACAAAATCCGGAAAATACCAAAATTTCAGACAGAAGTCATGCATTACATATTACAAAAGATGGTTGGACAGCTATCCAGAAAGAGTTAGATAgagaaaaaattgcaaaaagtgAAATAGAAAAAGACGAAGCACACAGAACATACTTGAAAGAAGGTTCTCAAAACATTATTAAAGATTGGGCCAACTCTTTAGGGaacgtAAGACAGAGAAGAGATTTGGAAAGGAAACAATTTAtagaacaagaaaaaaaaattcgacaaGAAAAATTTGAGGCCTTGAAAAAAGAACAAGAAAAAAAGCAAAGAGAAATCGTAGAAAAAGcacaaaaaactattttcctgGCATCAGGAACAGCCAAAATGTTGTCTAGTGCATATCAAGCAGGCGAGGTTTTTCACGAAAGAGAGAAGCAAATAGAATTCAAAGCCAAATTAAAGAAACACGAAGAAGAAGAGGAAGCCAAGGAAGTAGAAAAAGTAAAGCAGATTACACGAGAATACAAGGAAGGAATGAAACAGGAAAAATATAATgaccaacaaaagaaaaaagaacGAGGAGAATATTTGAGAGCATTTTTGGCCGAAAAAGCAAGAAAAGACGAGGAAGAATCCAAGAAAAACCTGCTTAGGGAAGAAAATGACTGGCGGGCTGCTGTAGACGAAATAAAGTGCATGGAAAGAATGGATAAGGAACgagaaataaagaaaaagaaagataCAGATGCAGATCTTCGATATCAATTAAAGACGCAATCCGAGGCCAAACGACTGAAAAACATAGAAGAAAAAGAATTAGATGAATGTGTTCAAACTTACCATGACGCAAAGCAAAGAATTTATTGTTTGAGAAGAGCTAGAGAAGTTGAAttaCGTGATGAGGCAATTGATCGTAGATTAGCTGCAACTAGGAGTACATTTGAAAAGAAGGCTGCCGCGGCTGCTGAGCTAGCAATAAAAGAGGAGGAATCTCTGCAAAAAGCCTTGGCTGAAAGAGAGGCTGAATATTTGGAAAGGCAAAAACGAATGAAAAACTTAAAAGACAAAGATGCAACCGATAAGATAGAAGACCTGAAACAATTCTTGATAAAAGAAGAAGAACGCAAAAAGGTCGAAGATGATTTAttaaaatgggaaaaattaaataaaatcaaaaccgCTGAAGCAATGAAAAAGGCAGTAGAAGAAAAGAGACGGAAAATACGTGAACAAAGGAAACAGTATGGAAAGGAATTGATCCAGCAAATGAACGAACAAAAAGAAGCTGAGCGGGCAGAAATCGAAAGGGACGAATACATAACCAAAATCACTGCTATCAACGATGACGAAAATTTCTTCGCTATGGCAGATGAAGTGATGGCACACGCTAAAGAAAAGGGAAGGCTTACACACCCTGTTCATAAAGctattttgGGTTACAGGAAAATTAATGAATTAGAATACGAGAGGCCACAAAAAGATGATCCAGCAAGGTGCGAGGATTACATGGAAGaatcAAGTGAATCTAGTCAAACTGAAACAAACTCCCAAATTAAATTTGAATCTTCATTCAATGAAAGTTTGGGTATCCTAAGTGATGAAGATGCCCATGATTCTCtggaagaaaatttagaagTGTCACTGGAAGAATTAGatgaagaattaaataaagattttaccATTGTTGAAAATGAGACTACTGTCTATAAGTGCCCAATGTGTGACCAAGTTTTTAAGAAGCTCCAAGAACAAAAAGAccataaaaagaaacatttcatTGAAAAACGGACgtgcaaaatttgtaaaagagtTCTTCAGAATTATGGAAAACTCCAAGAACACATGAACAAACATTTAGGACTGAAACCATTTAAATGTGATGTATGTGACAAGGCATTTATTTCTGTACATTATCTAAAATTACACAAGAAATGTCATAATACAGAAGCAACTTTTAAGTGCACTCTTTGTACTAAATCATTTAGGACTCTAAGCTCTCTAAGATGTCATCAGTTAGTACATGTAGAGAAAGTTGATGATTTTAGATGTAAGGTTTGCAGTATTGATTGCAAAGATCCTGTTACTTACAAATCACATATGCTGGAACATGGAAAGAAATCGGAAATTCAGTGTGGTTTGTGCAAAAAAACATTCAATACAGATAGAGGATTGGAGGCTCACTTAAGTACTCATCAGGAACTGAATTTTCCATGCGAATATTGTGGGAAAATATACCCCACAATGTACAGGATTAAAAGACATATTAAAAGAGCTCATATACCAAATACATGTCAGGAATGTAAAgagGTTTTTTACGATAGAGCTCAATTTACGAAACATCAAAAACAACATCAAATTGAGAAACCACAAGCGTGTCAGTATTGCCAAAAAGTGTTTGAAAAGGCAAAAAACTTGAGTGAACATATTAGATTGCAACATAAACAAGATGGAGAAATGAAGAAATGTCCTGTTTGTGGAAAAGAGTTTATCAATAATGCTTTATTGAAAAACCACGTCAAAACACATGACAAAAATTTTCAGTGCAAGCTCTGTGACAGGGTATTTTCTTCTCGgtCCAACTTAGAAATACATTGTGTCACACATTCTGGTGTCAAAAACTACAAATGCCACATTTGCGATAAACATCTCGGTTCCAAAGTGAGTTTGAAGAACCACATCGCGTCTCATTCTGAAGAACGACAATTCCACTGCGATGTTTGTGAGAAATCGTTCAAAACGAACAGAAGGTTGTATGTTCACAAAATGTGTCATGCCACTGAAGAAAAGTACCAGTGCGAAATTTGTCTTCAAAAATTCAgagTTAAACAATACCTCAAATTCCACATGAACAAACACTCAAAAGTCAAACCATTCGAATGCGATATTTGTAGGAAACGTTTTAAACATAAGAAATCTAGAGATAAACACGTCAAAATAGGCAAACACAAACAAGTGACTGATGAAGAGCACGATTGTGATTTTTGCGACGAAACGTTCGCTACTAGACAACTGTTGCTCGAACATTTCGAAGAAGCCCATCACAAGGAGAATATTATCAACAGTTTGAATGAATGTAGAGACGAAGACGTTGAAATGGAGGATAtggaaggtatggaagaaaaagaggAATGTAGTGAGAGTAATGATAGTCATAATTTTAATCAGTAG
Protein Sequence: MESRFYYFAGQNPENTKISDRSHALHITKDGWTAIQKELDREKIAKSEIEKDEAHRTYLKEGSQNIIKDWANSLGNVRQRRDLERKQFIEQEKKIRQEKFEALKKEQEKKQREIVEKAQKTIFLASGTAKMLSSAYQAGEVFHEREKQIEFKAKLKKHEEEEEAKEVEKVKQITREYKEGMKQEKYNDQQKKKERGEYLRAFLAEKARKDEEESKKNLLREENDWRAAVDEIKCMERMDKEREIKKKKDTDADLRYQLKTQSEAKRLKNIEEKELDECVQTYHDAKQRIYCLRRAREVELRDEAIDRRLAATRSTFEKKAAAAAELAIKEEESLQKALAEREAEYLERQKRMKNLKDKDATDKIEDLKQFLIKEEERKKVEDDLLKWEKLNKIKTAEAMKKAVEEKRRKIREQRKQYGKELIQQMNEQKEAERAEIERDEYITKITAINDDENFFAMADEVMAHAKEKGRLTHPVHKAILGYRKINELEYERPQKDDPARCEDYMEESSESSQTETNSQIKFESSFNESLGILSDEDAHDSLEENLEVSLEELDEELNKDFTIVENETTVYKCPMCDQVFKKLQEQKDHKKKHFIEKRTCKICKRVLQNYGKLQEHMNKHLGLKPFKCDVCDKAFISVHYLKLHKKCHNTEATFKCTLCTKSFRTLSSLRCHQLVHVEKVDDFRCKVCSIDCKDPVTYKSHMLEHGKKSEIQCGLCKKTFNTDRGLEAHLSTHQELNFPCEYCGKIYPTMYRIKRHIKRAHIPNTCQECKEVFYDRAQFTKHQKQHQIEKPQACQYCQKVFEKAKNLSEHIRLQHKQDGEMKKCPVCGKEFINNALLKNHVKTHDKNFQCKLCDRVFSSRSNLEIHCVTHSGVKNYKCHICDKHLGSKVSLKNHIASHSEERQFHCDVCEKSFKTNRRLYVHKMCHATEEKYQCEICLQKFRVKQYLKFHMNKHSKVKPFECDICRKRFKHKKSRDKHVKIGKHKQVTDEEHDCDFCDETFATRQLLLEHFEEAHHKENIINSLNECRDEDVEMEDMEGMEEKEECSESNDSHNFNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -