Caur035374.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- -
- Assembly
- GCA_949320105.2
- Location
- OX439481.2:1014612-1037848[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0068 0.85 11.3 1.3 1 21 95 115 95 116 0.95 2 20 0.16 20 7.0 5.5 1 23 145 168 145 168 0.95 3 20 2.2 2.7e+02 3.4 0.0 6 20 179 193 179 195 0.94 4 20 0.02 2.5 9.8 0.3 1 23 201 224 201 224 0.90 5 20 8.1e-05 0.01 17.4 2.4 2 23 302 323 302 323 0.97 6 20 0.54 68 5.3 0.1 1 14 348 360 348 370 0.75 7 20 0.0034 0.43 12.2 1.4 2 23 374 395 373 395 0.96 8 20 4.5e-05 0.0057 18.2 0.2 3 23 426 446 425 446 0.98 9 20 0.00052 0.065 14.8 0.3 1 23 466 489 466 489 0.97 10 20 0.0047 0.59 11.8 1.9 2 23 503 524 502 524 0.97 11 20 0.0031 0.39 12.4 8.1 1 21 553 573 553 575 0.94 12 20 0.00022 0.028 16.0 0.3 2 23 591 613 591 613 0.93 13 20 0.00024 0.031 15.9 1.1 1 23 633 655 633 655 0.98 14 20 0.00084 0.11 14.2 0.2 3 23 670 691 669 691 0.97 15 20 3.7e-05 0.0047 18.4 0.4 1 23 708 730 708 730 0.95 16 20 4.1 5.2e+02 2.5 0.0 1 23 764 787 764 787 0.93 17 20 0.0002 0.025 16.1 1.4 2 23 798 819 798 819 0.97 18 20 8.2e-06 0.001 20.5 1.0 1 23 850 873 850 873 0.97 19 20 3.5e-05 0.0044 18.5 4.8 1 23 881 903 881 903 0.99 20 20 0.0013 0.17 13.5 0.1 1 23 919 942 919 942 0.96
Sequence Information
- Coding Sequence
- atgggtttaggTCTGGCCAATGGTAACATAATCCACGCATCGGACACCGCTAAAGAAGAACAAAGAAAGATATTATTCGCAATGGGATTAAAACTCCTCAAAACCAACACAGAACCAATTTCAAGCGAACCACTTTCCAAAATAGAAATGAGTTATATCGAAAAGTGCAAAGCGATGGTAAGCATGCACAAATCCTTAATTTGCGCCTGCCACAACGTACCACATCAAAACCTGAAAGGTTTATTATCGCATCTAAGAGCCCTTAGGATATGGTTTCCGGTTTTTACTTGCTATAACTGTATGATAACTTTCACCGATCGTTCTACCTTCACCAGACACATTTCTAGATGTTCCAGTCAAGCTTTGAACTCGATAACGAAGCTCAGCAATTTAAGAAATCGTAGCGAGGTCAAAACTAGGTTATATCAGAACTTTAAGTGCACCATTTGCAAATTTATGTATAGTTTCCACGAAGATTTTTGCTCTCACGTAAACGAAGATCATTCTATGTTGCAATTTCCAGTTCACTGCCCATGCGGAAGAGTTTTCGAAGACGTAGACGACTACAAAGACCACGTTTATGTTAGCTGTTTGGTGGAATATTATTGCGATATATGTTTCATAACTACGAAAACTTTAGATGATTTTATAAAACATGCTACTGAAGTACACGATGACTCCGAAGGTTTCATTCTTCTACAGGACGATAattacaaagttagaaaacccGCAATGCATACAAGTCCAGCTTCGACCGGCGTAGACGAATCTGCTATCCTGACGGGTAAAAGAGAACGAAAAGCTTCTGTTAAAACCCCATTCTTGGACGATTTGGATGTTTTGGATGAAGTTCCGTCAGCTGTCATCAAGCCGACTTTCTACACACCGAAAACTGACAACCGAGTGTGTCCTGTTTGTCATAAAGAATATTCTAGTTACAAGAATATGATGCGACATTACAAAACTCACAAGAATGAAGATCCATCATTAGATCAATTTCCTTTGGATATGGATATGGATTTGGAAGATGAGGAATCATTCTATTCCTGTCCGGATTGCGGAGGTGTATATAACACTTTGGAATGGAAGATTCATCTAACTGAAAAGCATCAAAATAAACCTTGCGGAGAATGCGGGAAGTTTTTCCAATTCCAGACTGAGTTAGACCACCATAGGAGCGTGCATTTGAATATTAAAGTATATAGAGACTCGAAGACTCAATCATACAAGAGCACAATGGTCAGCCCTACAGCTGATGAGGAAGTTATGCTTTTATGCGAAATTTGTGACGTTGTGTTTACTACCAAAGAAGATTTGAACGAACACAAGCTTACGCACGAATCTCAAGAAGAAATGGATACTGCACTGGACCCGGTAACTCCGGATACGAGGAAATATAAATGTGAAGTGTGTAGTGAAGAATTCAACAGTTACTCAGGTTTATGGGAGCATAATAGAGTAAAACATCCTGAGAGGAAGACTCCTAATGCTGATACTTACCCTAAACAATGCAAAGATTGTGATAAAATCTGTACTACAGGTGCAGCTTATTACAGGCATAGGCAGATTCACGATAAACCTACACCAAATGATGCTAGTGTTAGCAAAACAGCTTTATTAAAGAGGAAAACAGAGAATCCTGAAGAAGAATCTTATCATACCTGCAAACGTTGTTTCAAAGTATTTTCCAGTAGGTACAATTTAAAGAACCACTTAAAGTGTCATGGTATCAATATCAACCCAGCCAGTAAGAGACTAATAAGAAAAgcagtttgtaaaatttgccaGCAAGTCTTTGAATCCAACGAAGATCTAATAAGGCACAAGCAAGAGAATCATAGCACCGAAGAATCGAGCGAAACCGAGCTGGACAATTCTCCAATGGGTCCTTTACTCTTCACATGCGATGTATGCGTAATGACGTTTACGAGTAAAATAGCGCTGAAGAAGCATAAAGAGAAACATACACAAGAAATGAAAGTAGCTCAAAAGCTACCACTggtgttttgtaaatattgcaAGGTTCCATTTGAATCATCAGCGCTGTTATCGCAACATATGTTGATGGAGCATGATGAGAGAGTAAAGAGAAAGGTGATTAAGAATGTACAACCAGAGCAGCATACTTGCTCGATCTGCCAAAAGTCTTTCCAGACTCCTGGGGCTTTGACTACTCACATTGGTTGGCATAAACGCGCTCAAAATGAAGGAAACACTAAGATAATGAAGAACAATCCTGTATTAACTCCAGCTAAAGTCGTTGTTAAGGAAGAACCGATGGATTCCAAGTACCAGTGTGCTACTTGTCTGGCTGAACTACCCAACGATACGGCCCTTCAAGTACACATTTTAGAGAAGCATAGAAGCGTTAGCGCCATTATGCTTATCCCACGTTGCAATACTTGTAATAAGGACTTTGCTACACAAGATGAATATGAAACACACAAACGTCTTCATGATTTCTTAGAGCGACAGAAGCAGCACGAGCAAAAAATGCTGCAACAGCAGCAGCAGGATAGTAAAACACAGCTGCAGAAACCAAAGAGTTATCCTTGTAAGCATTGCAACGCTGCGTTCAGCAGGTCTGATACGTTGGGGGCTCACATGAGGCAGTTCCACAAAGAGCATATCGTGACCGAATTTAAATGTCATCATTGCGATAGGATTTTCGAGAAGCAGAATTCGCTGACGATACATTTGAAGGTGCACGAGAAACAGAGGACGATGCAGAGTCCTGCTGGTAGTAAACCGTTGTTTTCTTGTTCGATTTGTAATATGGGATTCGATTTACCAAAGGATTTGAGAGCGCACACGATTAGTGCTCATCCATTCTGA
- Protein Sequence
- MGLGLANGNIIHASDTAKEEQRKILFAMGLKLLKTNTEPISSEPLSKIEMSYIEKCKAMVSMHKSLICACHNVPHQNLKGLLSHLRALRIWFPVFTCYNCMITFTDRSTFTRHISRCSSQALNSITKLSNLRNRSEVKTRLYQNFKCTICKFMYSFHEDFCSHVNEDHSMLQFPVHCPCGRVFEDVDDYKDHVYVSCLVEYYCDICFITTKTLDDFIKHATEVHDDSEGFILLQDDNYKVRKPAMHTSPASTGVDESAILTGKRERKASVKTPFLDDLDVLDEVPSAVIKPTFYTPKTDNRVCPVCHKEYSSYKNMMRHYKTHKNEDPSLDQFPLDMDMDLEDEESFYSCPDCGGVYNTLEWKIHLTEKHQNKPCGECGKFFQFQTELDHHRSVHLNIKVYRDSKTQSYKSTMVSPTADEEVMLLCEICDVVFTTKEDLNEHKLTHESQEEMDTALDPVTPDTRKYKCEVCSEEFNSYSGLWEHNRVKHPERKTPNADTYPKQCKDCDKICTTGAAYYRHRQIHDKPTPNDASVSKTALLKRKTENPEEESYHTCKRCFKVFSSRYNLKNHLKCHGININPASKRLIRKAVCKICQQVFESNEDLIRHKQENHSTEESSETELDNSPMGPLLFTCDVCVMTFTSKIALKKHKEKHTQEMKVAQKLPLVFCKYCKVPFESSALLSQHMLMEHDERVKRKVIKNVQPEQHTCSICQKSFQTPGALTTHIGWHKRAQNEGNTKIMKNNPVLTPAKVVVKEEPMDSKYQCATCLAELPNDTALQVHILEKHRSVSAIMLIPRCNTCNKDFATQDEYETHKRLHDFLERQKQHEQKMLQQQQQDSKTQLQKPKSYPCKHCNAAFSRSDTLGAHMRQFHKEHIVTEFKCHHCDRIFEKQNSLTIHLKVHEKQRTMQSPAGSKPLFSCSICNMGFDLPKDLRAHTISAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -