Caur031848.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Crepidodera aurea
Gene Symbol
-
Assembly
GCA_949320105.2
Location
OX439479.2:6167211-6178526[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 9.3e-05 0.012 17.2 0.5 3 23 415 435 414 435 0.99
2 17 6.1e-05 0.0077 17.7 1.7 1 20 441 460 441 463 0.94
3 17 0.00013 0.017 16.7 1.0 1 23 469 491 469 491 0.98
4 17 0.00059 0.074 14.7 4.3 1 21 497 517 497 519 0.94
5 17 1.3e-05 0.0017 19.8 5.7 1 23 525 547 525 547 0.99
6 17 2.7e-05 0.0034 18.9 5.3 1 23 553 575 553 575 0.97
7 17 4.5e-06 0.00057 21.3 7.2 1 23 581 603 581 603 0.97
8 17 1e-07 1.3e-05 26.4 2.7 1 23 609 631 609 631 0.98
9 17 7.7e-05 0.0097 17.4 6.7 1 23 637 659 637 659 0.97
10 17 0.0001 0.013 17.0 4.8 1 23 665 687 665 687 0.97
11 17 3.6e-05 0.0045 18.5 8.0 1 23 693 715 693 715 0.98
12 17 3e-05 0.0038 18.7 9.1 1 23 721 743 721 743 0.98
13 17 1.8e-05 0.0023 19.4 7.7 1 23 749 771 749 771 0.98
14 17 1.1e-05 0.0014 20.1 7.1 1 23 777 799 777 799 0.97
15 17 8.7e-05 0.011 17.3 0.5 1 23 805 827 805 827 0.97
16 17 0.094 12 7.7 5.0 1 23 837 859 837 859 0.98
17 17 4.5e-07 5.7e-05 24.5 1.9 1 23 865 887 865 887 0.97

Sequence Information

Coding Sequence
ATGAATACTGATAATCAGAATGTGTTACCCACAGTGCATGGCACCTCAAACTCTGAGGGCTCTTCACAGAGGAGTCCAGCAACTACATCGGTCCCAACAGACTTGAGAGTCAACACTACAGCTTTAAATGCTGTAGCATTAAGCAATGTTGCTAAGTATTGGGTTTTGACCAATTTGCTACCAGGACCAATACCACAGGTGTCTGTATATGGATTACCAGGTGCAAGTAGAGAAGCCCAAGGAAAAATTTCACAAGATGCTGTACTTAGTCAACATAGTTTTCTACAAACTGATCCTTTACTCATACAACAACATACTCAAATTCCTGTTAGCATTGCAACATCACAAGGCACGTTGGGGTTAACTACAAGTGGAGTACATTTAGAAAATGCTCACAACATTTCTAGTCATTCCAGTGACAATATATCTTCAAGCCAATTGTCTAGGGATATGaggATATCACACTCACATCATCAGAATCAACAATCACAACAACAGCAACAACACCAGCAGCAGCAACATCACCAACACCAACAGAATCAGCAAAACATGGTTCAAGTGCAGGTCCAAGATAATTTAGTGTCAGTTATAGAAGATAGCAAAGATCAGAAGGACATTATCTCAGCACAACTGCAAGCTGCTCAATTGCAAATTGCCGAAAATCACATTGGTCAACAAGCTCTTAGTGTACAACAGTTGCAACATCTTCAAGTTCAACAAGTTCTGGAAAATGTGgtcCGTTTGGAGAATTCGGTGGAAAACAATCAAAACCAAACAAATAATGATAATCAGGATTCTCTTACCGAAACCATTCAAATCGTCAAAGATGAAAAATCGTTTCCAAATTGTAAATTAGTATCTGGTGTCTCTGGTGCTCAATTCGGATTGCAGGATCTCAAAGGAAGCTTAATGGATGTCAGAACTGCAGATGGAAGTATCGTTAAAATTCAAACAAACATGCAAGAACAGGAGATTGTTAAGACTCTTGGAGTTGATATTGTCAACAATATGTACAAAGTAAATGTAGACGACTTGAATCAGTTGTTGGCTTATCATGAAATTTTTGGAAAGCTGCAGGGTAACCAAAGTACAGATTTGTCTACCAGTAGTCCGAACGTACCTCAGAACGccaacaatttaaatttatcaaattccAACTTAATTATCGCTAAAGATGAACAAGAGCCATCCACAAGTAACATTAACAACGAAAACTTACCCACCGTGGTTCCGACTCACGGTTGCGATCTCTGTGGTAAAATGTTCCAGTATCGTTACCAACTAATCGTTCATAGACGTTATCACACCGAAAGGAAACCATTCACTTGTCAAGTGTGCGGAAGAGCTTTTACAAATGCACAAGAACTCACTCGACACGGAAAGTGCCATCTAGGAGGAAGCATGTTTACTTGTGCAgtctgttttcatgtttttgcAAACGATGCTTCGTTGGAAAGACATATGAAACGTCATTCTACAGATAAACCGTACGCGTGCAGTATTTGCTCTAAAACTTTTGCCAGAAAGGAACATTTGGATAATCACACAAGGTGTCATACTGGGGAAACACCCTATAGATGTCAGTACTGTACAAAGACGTTTACAAGGAAGGAACATATGGTGAATCACGTAAGGAAACATACAGGAGAAACGCCTCATAGATGTGAAATTTGTAAGAAATCGTTTACAAGAAAGGAACACTTCATGAATCACGTAATGTGGCATACCGGTGAAACCCCTCATCATTGTACGATTTGCGGCAAAAAATATACTAGAAAAGAGCATTTAGCGAATCATATGAGAAGTCATACCAATGATACACCTTTCAGatgCGAGATTTGCGGCAAATCTTTTACGAGAAAAGAACATTTTACGAATCATATAATGTGGCATACCGGAGAAACACCTCATCGATGCGATTTCTGTTCAAAGACGTTTACAAGAAAGGAACACCTTCTGAACCACGTAAGGCAACATACAGGGGAATCACCGCATCGATGCGGATTCTGCGCCAAATCGTTTACTAGAAAAGAACATTTGATTAATCATGTCAGGCAACACACAGGGGAATCCCCGCATAAATGTACGTTTTGTACAAAATCCTTTACAAGAaaagaacatttaaataacCACGTACGACAACATACCGGCGAGTCTCCGCACAGATGTCACTTTTGTTCCAAGTCGTTTACGCGGAAGGAACACCTTACGAATCACGTCAGGATTCACACAGGTGAATCTCCTCATCGATGTGAATTCTGTCAAAAAACCTTTACCCGCAAAGAACACTTAACCAACCATCTTCGACAACACACCGGAGAAACGCCTCATTGTTGCAACATCTGCTCGAAGCCGTTTACTAGGAAAGAACATCTCGTGAATCATATGCGATCGCATACGGGAGAACGACCTTTCGCTTGTACAGAGTGCGGAAAATCGTTTCCCCTTAAAGGAAATTTACTTTTCCATCAAAGGTCGCACAATAAAGGTGCAGGAGCCGAGAGACCGTTtagATGTGATCTATGCGAAAAAGACTTTATGTGCAAAGGTCACCTTGTATCGCACAGAAGATCACACAATAATGATCGGCCTCACGTGTGTCCACATTGTGGCAAGGCTTTTGTTGAAAAAGGAAACTTGTTGCGTCATTTGAAGAAACACAATACCGATAACGCCAGCGCCCCGGTACCGTCACAAGGTGCCATGCAGATTCCTGCGTAG
Protein Sequence
MNTDNQNVLPTVHGTSNSEGSSQRSPATTSVPTDLRVNTTALNAVALSNVAKYWVLTNLLPGPIPQVSVYGLPGASREAQGKISQDAVLSQHSFLQTDPLLIQQHTQIPVSIATSQGTLGLTTSGVHLENAHNISSHSSDNISSSQLSRDMRISHSHHQNQQSQQQQQHQQQQHHQHQQNQQNMVQVQVQDNLVSVIEDSKDQKDIISAQLQAAQLQIAENHIGQQALSVQQLQHLQVQQVLENVVRLENSVENNQNQTNNDNQDSLTETIQIVKDEKSFPNCKLVSGVSGAQFGLQDLKGSLMDVRTADGSIVKIQTNMQEQEIVKTLGVDIVNNMYKVNVDDLNQLLAYHEIFGKLQGNQSTDLSTSSPNVPQNANNLNLSNSNLIIAKDEQEPSTSNINNENLPTVVPTHGCDLCGKMFQYRYQLIVHRRYHTERKPFTCQVCGRAFTNAQELTRHGKCHLGGSMFTCAVCFHVFANDASLERHMKRHSTDKPYACSICSKTFARKEHLDNHTRCHTGETPYRCQYCTKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCAKSFTRKEHLINHVRQHTGESPHKCTFCTKSFTRKEHLNNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNICSKPFTRKEHLVNHMRSHTGERPFACTECGKSFPLKGNLLFHQRSHNKGAGAERPFRCDLCEKDFMCKGHLVSHRRSHNNDRPHVCPHCGKAFVEKGNLLRHLKKHNTDNASAPVPSQGAMQIPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00056849;
90% Identity
-
80% Identity
-