Caur020998.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- RTase
- Assembly
- GCA_949320105.2
- Location
- OX439475.1:8696059-8702213[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.6e-11 2.5e-08 34.6 0.0 3 39 251 287 249 291 0.94
Sequence Information
- Coding Sequence
- ATGAGAAATTTTGCAAAGACTTGCGTACAACAAGAAAAGGCTGCGTATTTGGAGTATCTCGCTAAGAAGGAAAATTCGTCATCATTTTTCAAGGCTTTGAAAACGCTAAGAATACAAAATTCCAAGCCAATGGAAATTCCACCTCACCTATTAGATCCTGAAGAAATTAATGACTATTTTGTGACTGTTTTCAGAGATAATGATGCAGAATGTCTGGACAACATAGACTACTATAATGGGCATAGATTCAACGAATCAGTTTTCGAGTTTAAAATGACTGACACATcgaacattataaaaattatacgtAAAATTAAGTCAAATGCTAAAGGCGCAGATGGTATTACTCTCCAAATGTTAACGCTTTGCTTACCAGCCATAGCGGATTATTTAACACACATAGTTAACTGTTGTTTGGAAACCGGTTTCTTTCCAGATGTGTGGAAAGATGCACTGGTGAACCCAATACCCAAGGTAAGCAATCCTGCAGAGTTTAGCGATCTACGTCCAATTAGTTTGTTGTCTGTCATATCAAAGATATTAGAGAAAGTTGTATACCAACAAATTATTGAGTacattcaacaaaataaattaataccaCCTACGCAATCGGGATTTAGACCTGGCCATAGCACAACAACAGCACTTGCAAGAGTTTCTGATGACATTTTAAGAGCTTCTGATCGTAATTTGGCAAGCACGCTAATTCTGCTTGATTTTAATGCTAAGTCAACGAAAAAATGGAACAAGGAAAATATGATAGAAGCTATTAAAGCTTGTAGAGAGAAAAGAATGGGCTACATGAAAAGTGCAAAAACTTTTGGAGTCCCACAGACTACGCTGGAAAGGTATGTAAAATTGAATAAAGAACCAGAAAAAGTTGTAGATGAAAGGCTAGGAAGGAAGCCAGTtttaaatttagagaaacatttttttgggtTAACTAGAAAAGACATCTGTAGACTGAGTTTTGAGTTATGCAAGAACAATAACCTAAAAAGCCCATTCAGCACCCGAAAGGAATGCGCAGGATCAAAATGGCTTGCAGGATTTCTAAAACGGAATACGGAACTCTCATTTCGAACGCCACAGGGAATATCGTATGCCCGAGTAAGATCATTTACCAAAGTAAATATTGCAtcgttttttgatatttatgaaCCTTTGCTAGAAAAAGTAAAACACAATCCAGCACGTATTTTCAATTGTGACGAGACAGGCATTACCATAGTGCAACATAAACATCAAAAAGTTCTCAGTTTAATAGGAAAAAAACAAGTTGCAGCCCTTTCGTCTGCCGAAAGAGGCTCCCTCATGACAACTGTTATGTGTTTTAGCACAACGGGCGTTTATATTCCTCCATTCATAATTTTTCCTAGGAAGAATATGAAACTTGAATTGATGAATGGTATGCCTCCTGGTTCCATACATGCTTGTCATCCATCGGGCTGGATACAACaagatatttttgttaattggtTAAGACATTTTATCAATCATACAAAACCCACCCGGAAGATCCAGTTGTACTTGCTCTTGACGGTCACTACAGTCATACTAGGAATTTGGAAGTCATCAATGTAG
- Protein Sequence
- MRNFAKTCVQQEKAAYLEYLAKKENSSSFFKALKTLRIQNSKPMEIPPHLLDPEEINDYFVTVFRDNDAECLDNIDYYNGHRFNESVFEFKMTDTSNIIKIIRKIKSNAKGADGITLQMLTLCLPAIADYLTHIVNCCLETGFFPDVWKDALVNPIPKVSNPAEFSDLRPISLLSVISKILEKVVYQQIIEYIQQNKLIPPTQSGFRPGHSTTTALARVSDDILRASDRNLASTLILLDFNAKSTKKWNKENMIEAIKACREKRMGYMKSAKTFGVPQTTLERYVKLNKEPEKVVDERLGRKPVLNLEKHFFGLTRKDICRLSFELCKNNNLKSPFSTRKECAGSKWLAGFLKRNTELSFRTPQGISYARVRSFTKVNIASFFDIYEPLLEKVKHNPARIFNCDETGITIVQHKHQKVLSLIGKKQVAALSSAERGSLMTTVMCFSTTGVYIPPFIIFPRKNMKLELMNGMPPGSIHACHPSGWIQQDIFVNWLRHFINHTKPTRKIQLYLLLTVTTVILGIWKSSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -