Caur023555.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- -
- Assembly
- GCA_949320105.2
- Location
- OX439475.1:36439767-36443986[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.7 4.2e+03 -1.3 0.0 5 15 193 203 192 204 0.85 2 2 1.1e-10 6.1e-08 33.4 0.0 2 40 320 359 319 364 0.92
Sequence Information
- Coding Sequence
- ATGTCTAGCAGAATAATGAAGATAGAAAATGTCACTATCATACAGAAGGAACCTCTCATTTTAGCTGGTGAACATATTTACACACAAAAAATGATTAtgcattttcataaaaaaaatgctCATCAGGGTGTTGAAACACTCATAAATGAACTGAGAAGGAAATTTTGGATACCCCGAATTCGGACAACAGTGAAAAAAGTTGTCAAGCAATCGACCGGAATTGATTATTGTGGTCCCTTTCAAGTGAAAATCGGAAGACGCCTCGAGAAATGTTATGGTGTACTATTTACCTGCTTAACAATGAGAGCGATACATGTTGAAATTGCCCATTCCTTAGATGCAGATTCGTGCATAATGGCTATACGTAGATTTCTTGCAAGACGTGGAGCAGTTAAGGTTTTTTGGTCCGATAATGGAACGAATTTCCATGGGGCAAATCGAGAACTTTTAGAAGCTCTAGACGAATTAGAAATGAATACTGTGGTTGATGATATGGCCAGCAGGGGCATCGACTGGAAATTCAATCCCCCTTCTGCTCCTCATATGGGGGGTAGCTGGGAACGACTTATAGGGTGTTTCAAAAGGGCTCTTAAGGCGATTATGAAAGAAAGGCATCCCAAAGAAGAGGTTCTACAAACATTGTTTGCTGAGGTGGAATATATCGTTAATAGTCGTCCGCTGACTCATGTTTCTGAAGATTCCCAAGATTTAGTTAGCATTTCCCCACATGATGTTCTCATAGGACAGTCTTCAACGGTAATTGTGCCTGGATTGTTTACAGAGAgagatttgtttttgaaggagCAGTGGAGAGTATCACAATACTTGGCAGATATATTCTGGAAACCTTGGCTTCGGCAATATATTCCTACTTTGATTAATCGTGGAAAGTGGAACAAAGAAAGTGGAATGGTGCGAGCCTATAAAAGAAAACGTCCTACTCAGCCAGAAATTCCTAGAGAGGACTTGAAAAATGCGGTGAAGAATATTATCAGCAATAGTATGTCTTTAAGAGCTGCTGCAATAAGATTCAATATACCTAAATCAACTTTATTCGACAGAGTTGTCAGAGCTAAAAGGCGTTCCAAACAGAGGAAGAGTTTGCTTCATCAAAATATGCAACACGGCAAGTGTTCTCACAAAAGGAATAAATCGAGCTGGAGATATATTTAA
- Protein Sequence
- MSSRIMKIENVTIIQKEPLILAGEHIYTQKMIMHFHKKNAHQGVETLINELRRKFWIPRIRTTVKKVVKQSTGIDYCGPFQVKIGRRLEKCYGVLFTCLTMRAIHVEIAHSLDADSCIMAIRRFLARRGAVKVFWSDNGTNFHGANRELLEALDELEMNTVVDDMASRGIDWKFNPPSAPHMGGSWERLIGCFKRALKAIMKERHPKEEVLQTLFAEVEYIVNSRPLTHVSEDSQDLVSISPHDVLIGQSSTVIVPGLFTERDLFLKEQWRVSQYLADIFWKPWLRQYIPTLINRGKWNKESGMVRAYKRKRPTQPEIPREDLKNAVKNIISNSMSLRAAAIRFNIPKSTLFDRVVRAKRRSKQRKSLLHQNMQHGKCSHKRNKSSWRYI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -