Caur008234.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- -
- Assembly
- GCA_949320105.2
- Location
- OX439472.1:103119188-103119898[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.9e-12 4.8e-09 36.9 0.0 1 42 18 58 18 60 0.95
Sequence Information
- Coding Sequence
- ATGGTTCGAacccaaaaaaaagttttggggTCTCGTAAATACCGAAATTTCTCGAATGAGCAACTGGTTAAAGCAGTGGAAGCTGTCAGGTCTGGACTTTCTTTGAGAAAAGCGGAAGAGCAGTTTGGTATACCACGATGCTCTATCAATAGAGCAATAAAAGGGAAAAATACAGGGAAGGTCGGCAGACCATTTGTTTTGCATGAAGTTGACCAGAATGCATTAGTAGTGTGTCTATGTGCAGCAGGGGATTGGGGCTTCCCCCTCACACTATACGACATTAGACTCATTGTTAAAGCCTTCCTTGACCGTTCTGGAAGAAATGAATCTAGATTCAAAAACAGCATGCCAGGTCCAGATTTTGTCATGTCTTTCTTGAAGCGTCACCAGAACACATTAAGTAATAAAATGTGCCAGAACATAAAGAGAGCTCGAGCCAAAGTCGACCATAACGCCATAAATCTGTACTTTGATGAGTTAAACCAGTCAATGGAGGGAGTTCTTCCTCATTCTGTCATTAATTATGACGAAACAAATATTACAGACGACCCTGGCCGTAAAAAATTTGTTGTTAGAAGAGGGTGCCGACATCCTGAAAGGATTATTGACTCCTCAAAGTCGAGCACTTCTGTGATGTTTGCTGCTGCCGGGGACGGGACACTTCTACCCCCATATGTGACATATAAAGCTGAGAATCTTTATAATACCTGA
- Protein Sequence
- MVRTQKKVLGSRKYRNFSNEQLVKAVEAVRSGLSLRKAEEQFGIPRCSINRAIKGKNTGKVGRPFVLHEVDQNALVVCLCAAGDWGFPLTLYDIRLIVKAFLDRSGRNESRFKNSMPGPDFVMSFLKRHQNTLSNKMCQNIKRARAKVDHNAINLYFDELNQSMEGVLPHSVINYDETNITDDPGRKKFVVRRGCRHPERIIDSSKSSTSVMFAAAGDGTLLPPYVTYKAENLYNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01047040;
- 90% Identity
- iTF_00330476;
- 80% Identity
- -