Cdil004418.1
Basic Information
- Insect
- Creontiades dilutus
- Gene Symbol
- L
- Assembly
- GCA_031894815.1
- Location
- JAVIWC010000600.1:523521-549240[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 4.6e-06 0.00074 21.1 1.0 1 23 57 79 57 79 0.98 2 21 0.09 15 7.6 6.5 1 23 85 107 85 107 0.97 3 21 1.1e-06 0.00018 23.0 2.0 1 23 113 135 113 135 0.99 4 21 1e-05 0.0016 20.0 0.3 1 23 141 163 141 163 0.98 5 21 3.4e-05 0.0056 18.3 0.3 1 23 178 200 178 200 0.97 6 21 0.0043 0.69 11.8 0.0 1 23 242 265 242 265 0.93 7 21 0.018 2.9 9.8 1.2 1 20 277 296 277 300 0.89 8 21 0.16 26 6.8 0.3 3 23 365 385 364 385 0.98 9 21 0.00078 0.13 14.1 0.2 3 23 409 429 408 429 0.97 10 21 0.41 67 5.5 0.3 3 23 439 460 437 460 0.92 11 21 0.12 19 7.2 0.2 1 23 465 488 465 488 0.93 12 21 0.0024 0.39 12.5 2.5 1 23 564 587 564 587 0.97 13 21 1.2 1.9e+02 4.1 0.3 3 23 671 693 670 694 0.86 14 21 0.0048 0.77 11.6 2.7 2 21 707 726 706 727 0.93 15 21 2.4 3.9e+02 3.1 0.8 1 23 738 760 738 760 0.74 16 21 7.7 1.2e+03 1.5 1.0 2 23 768 789 767 789 0.90 17 21 0.024 3.9 9.4 3.9 2 23 865 887 864 887 0.94 18 21 0.0046 0.74 11.7 1.1 1 19 891 909 891 911 0.96 19 21 0.19 31 6.5 0.1 1 23 920 942 920 942 0.96 20 21 0.001 0.17 13.7 0.1 1 23 950 972 950 972 0.97 21 21 0.0054 0.87 11.4 3.3 1 23 979 1001 979 1001 0.95
Sequence Information
- Coding Sequence
- ATGTTATCGGATGTGTTGACAGATGCCCTGGGGACCGAAGGAGTCTCGTCGTGGACGGGCTCTGAAGGGCAAAGCTCACCGCCGTCCTCCTGTGCGACGCCCAACTCCGCCACAGAGCTCGCTGACTCCGAGTTGGCCTTCACCGTTGGCGTCACAGAGGCGACTCCCTACGCCTGCCAATTCTGCGACAAGGCCTTCCCCCGCCTCAGCTACCTCAAAAAACATGAGCAGACGCACAGTGATCATTTGCCTTTCATTTGTGAGTTCTGCAAACGAAGGTTCAAGCACAAAAGAAGTAAAGACCGTCACCTGAAGCTCCACACGGGAGACAAGAGATATAAATGTTCTCAATGCCAAGCCGCCTTCGCTCGCAGTGACCACCTAAAGATCCACATGAAGACACACGACAATCAGAAGCCTTTCCAGTGCACGATCTGTAACAGGGGCTACAACACGGCAGCCGCGCTCACGTCTCACATGCAAAACCATAAGAAGTCCAGCGAGCCAGACACCTCACCTTCAGGCAGCACTTTCAAATGCCTCGAGTGTTCTGAAGTTTTCTCTAAACCAGAACTCCTGACAAATCACATGACTGAACATCAAGGAAATACCAGTAAGAGGAGAGCGTCGCCATCTCTCTCCAAGCTTGGTTGTATGTACTGTACCAAAGACAATTTTAGTTCCATGGAAGCTCTTCAACTTCACATACAAGCGATGCATGGTTATGCATGTAGGTTGTGCACTATGGTTTTTCCATCGTCAGGGACTCTGCAAGCTCATGCAGCAGTTGCTCATGGCATCCAAGGGGAGGGGAGTGGAGCAGACGAACACCAGTGCCCCCAGTGCAGCCTTAGTTTCAGCTCTCTCAACTCATTTGCCGAGCACTTTGTCCTCTCTCATGGAGCGCCCCCTCCACCTGGGAAGACCAAGTCCTTGGCTGATCAAGTTCTCCCAACCGATCTCAGCATTGTCCGCAAAGAGCAAAACGACAAACCGCCAGCTGTCAAAAGGAGCCGTGGCAGCGCTCATGCACCCGACCAACCCAGGAACAGCTCTCAGGTGGTGCAGTATGACCATCCAGGGATCCTCCTATGCAATCAATGCAATGCAGCGCTCCCCGACTTTGAGTCGTTTCGCAGCCACCTCAAAAGCCACTTGGAGGAGACGACGTTTAGTCCAGCGCCTCCACCTATCGGCCCTTCGCGCCTCCCACGGCTCAATATCTGCTCTTATTGCGGGGCCCACTTGCCGTCTTCTGACGAGCTCACCCGGCACATAGGCACCCATTTTCTCTCCACAATCACTGAGTACGGCTGCCAGAGCTGCTACCAGCTTTTCCAGAAACCTGAAGACCTTCAGAAACATCTGCTTGAGATGCACGCTCAAAACTGGTACCGCTGTACTCTATGCAAGGAGCTGTTCGAATCACAAGCTGCCATCCAAgttCATTTTGCTGTGAAGCATTGCAGTGAAACCAAACAGTACAGATGTGCGGCGTGTCCTAATGCTCCTTCTCTCCACTCAGAGCTGGAGTTCAGTCTTCACATCAGAGCAGTCCACTGTACTTACAGTTTGTCGCCTAATCCACCTGTGATTTCTTCCCCTCGGCTGCACAGATGCATATTCTGCAATCTGACCTTTAATTCCGACATTGAGATGCAGTTCCACCTGGCGGTTCACACCAAACTATTTCAATGCCCCGTATGCAGTGAAGCCTTCCACGTAGAATATTTCTTGGAAAAGCACATGCAGCTTTGTCATCCAAACCAGAATTCATCTGTAAGACATGAATCTTATGAAAAGAAGATTCATGAAGGTGAAAAACCTCTGAATGGATTCCACCCTTCTCCGTCCACTGTGGCCAACTTCAACTTGACTGCCAACACCAACGGCAGCGCTGCTCCTGAGAGCGGTAAAAGGCCTGAGATCAGCAGCCACCACATAGTCAACAGTCAAagtaacaataacaacaacaacaataacaataacaacaacaactcCATTGGAACCTGCGACATTTGCGAAAGTGGTGAGTTCTCTTCAGAGGCTGAGCTTAACGCTCACCGGAAGCTTGTGCATCACCTCAAAACATCGTCTTCTGTGACGAAGGTAAGCTTGCACTGTGCTTATTGCAAAGAAAGTTGCAAATCACGGACGGAGCTGGAGAATCACATGAAAAGCTACTGCCAAGCTGCGATTGGTTCTAGCAAACACAAATGTAATATCTGCGACGAAATGTGCCTTTCTGCAGCGATATTGGCTGAACACAAGTTGACTCATTGCAAGGTGGTTCACGGATCGACGTGCACACACTGCAAAGCACTGATCACAAACGAAGACAGTTTCATTTCCCATTCTATACAGCACTTGAATTCTGGCTCAAGCAACTCCCAGCAACAGCTTGTTCTCCCCAACGCCTGCGTCATATGTCGGCAGACGCTGACAAGCGAGATGGAAACTCGCCTTCACGCTAAGTTCCATCTCCAGACGGACGTGGTCAAGTGTTCCATGTGCCTCCAAAACTACGAGCGTTCCGAAATGGCCGACGGAGCTTGCAAATCCTGTCACAAGCGGGCGAGAACGTCCCCATGCGTCTGCGTGCATTGTCACATACAGTTCGAATCCACGTCACTTCTTGAACTGCACATGGCAAAAACTCACAAGCAATCGTTCAAATGCAGTAAGTGTAAGgaggtttTCGAATCTGAGAAAGATTATGAACGACACAGCTCAGGGGTATGCGGGGTTGACAATGTGTTCAAGTGTCGACTTTGCCTGCTGCTCTTCCCAGGACCCACTCAACTACAGTCTCACCTCATTGAGCACACGTTTGCCGGGTGCCCCAACTTCACGTGCTACATCTGCAGCGCCGTTTTCACTACTGCCACAGGTCTTCAAGGCCATATCCTTGAGCACGGCTTGTCTGCTAGGCCCTATGACTGCTCCAAGTGCTCCAAGAAGTTCTTCTTCCGCTCTGAACTCGAGAATCACTCGTTCATGCATATCAAGAGTACATATCAGTCCACAGACCAAGGTGGAAGTAAGCACTTTACAGACACTCACAACAGCCTGTTCAAGACCGAATCTGACTCCAAGAGCGTTGGAAAAAATCACGAGGCATCGAGACCACCTCAGAATGGTCTGAACTTGATCAAACAAGTTCACACACAAATACCTAGTGGCGCTCCAAGCGACTCCACTAACAATTCGAACGAAGACCGCATTAGGTTTGAGAGCTCATCTCCTCCTGAAGCCGCAAGCATTAAAATGGAAGCCTCTCAACCAGAAACCACGTCTGTTATCTCAGAACAGGTGGAAATCAGTGATGTGACtataaaaaaagaggaagaataG
- Protein Sequence
- MLSDVLTDALGTEGVSSWTGSEGQSSPPSSCATPNSATELADSELAFTVGVTEATPYACQFCDKAFPRLSYLKKHEQTHSDHLPFICEFCKRRFKHKRSKDRHLKLHTGDKRYKCSQCQAAFARSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKSSEPDTSPSGSTFKCLECSEVFSKPELLTNHMTEHQGNTSKRRASPSLSKLGCMYCTKDNFSSMEALQLHIQAMHGYACRLCTMVFPSSGTLQAHAAVAHGIQGEGSGADEHQCPQCSLSFSSLNSFAEHFVLSHGAPPPPGKTKSLADQVLPTDLSIVRKEQNDKPPAVKRSRGSAHAPDQPRNSSQVVQYDHPGILLCNQCNAALPDFESFRSHLKSHLEETTFSPAPPPIGPSRLPRLNICSYCGAHLPSSDELTRHIGTHFLSTITEYGCQSCYQLFQKPEDLQKHLLEMHAQNWYRCTLCKELFESQAAIQVHFAVKHCSETKQYRCAACPNAPSLHSELEFSLHIRAVHCTYSLSPNPPVISSPRLHRCIFCNLTFNSDIEMQFHLAVHTKLFQCPVCSEAFHVEYFLEKHMQLCHPNQNSSVRHESYEKKIHEGEKPLNGFHPSPSTVANFNLTANTNGSAAPESGKRPEISSHHIVNSQSNNNNNNNNNNNNNSIGTCDICESGEFSSEAELNAHRKLVHHLKTSSSVTKVSLHCAYCKESCKSRTELENHMKSYCQAAIGSSKHKCNICDEMCLSAAILAEHKLTHCKVVHGSTCTHCKALITNEDSFISHSIQHLNSGSSNSQQQLVLPNACVICRQTLTSEMETRLHAKFHLQTDVVKCSMCLQNYERSEMADGACKSCHKRARTSPCVCVHCHIQFESTSLLELHMAKTHKQSFKCSKCKEVFESEKDYERHSSGVCGVDNVFKCRLCLLLFPGPTQLQSHLIEHTFAGCPNFTCYICSAVFTTATGLQGHILEHGLSARPYDCSKCSKKFFFRSELENHSFMHIKSTYQSTDQGGSKHFTDTHNSLFKTESDSKSVGKNHEASRPPQNGLNLIKQVHTQIPSGAPSDSTNNSNEDRIRFESSSPPEAASIKMEASQPETTSVISEQVEISDVTIKKEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -