Basic Information

Gene Symbol
pol_1
Assembly
GCA_031894815.1
Location
JAVIWC010009434.1:612071-641551[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.1e-12 1e-08 36.4 0.0 3 46 566 610 565 610 0.96

Sequence Information

Coding Sequence
ATGAGCCCAGAAAGCATACAAAAGACAGCTTTCAGCACTCCAACATACCACCTGGAGTTCAATCGTCTCCCTTTCGGCCTCCGGAATTCACCCAGTACTTTTCAGAGGTTAATGGACAGTGTGCTGCGAGGAATTACGAATGAATATTGTTGCGTCTACTTAGACGATATAATAGTTTACAGTACCTCCCTCACAGAACATATAAATCGCCTAGAAGAAGTCTTCAAAAGACTGCGAAAGGCAAACCTCAAGATCCAACCCGATAAAACCGAATTCCTCCGAAAGGAAATAGCTTATTTAGGTCACATCATAACCCCAGAAGGAGTAAAACCTAAcccagaaaaaataattgctaTCCAAAATTATCCGATCCCCTCTACACCTAAAGAAATAAAATCTTTCTTAGGCTTGCTAGGTTATTACAGAAAATTCATCCGAGATTTTGCCAAAATCACCAAACCATTAACCCGCTGTCTTAAGAAAGGTAGTAAAATCAATACCAAAGAAACTGAGTATGTTGAGGCTttcgaaaaatgtaaacaaCTCCTCACCAACGAACCCATACTGCAATACCCAGATTTCTCAAAACCGTTCCACTTAACGACGGATGCCAGCAACGTAGCTATAGGAGCTATCCTAAGCCAAACAACTAACGGAGCTGACCTTCCGATAGCGTACGCAAGTCGCACGCTATGTGACTCTGAAAGACGACTTTCTACCATAGAGCGAGAATTGCTCGCAGTCGTCTGGGGAGTCCAGTACTTCAGACCCTACCTTTTCGGCCGTAAATTTAAAATCCATACGGACCACAAGCCTCTACAGTGGCTATACTCCATAAAGGAACCAGGGTCGAAATTGTTCAAGTGGCGAACAAAACTATCCGCTTACGATTTCGACATCGAGTACAAAAAAGGTACGTTGAATTCCAACGTCGATGCCCTTTCTCGAGTTGAAATACTAAATAACAACGACGACGAACCCGTCGCAAAAGCGGACGAAGCTGTTGAGGCCTTCTTTGAGTCACTCAGCCCGGAAACGCTTCACAAAATAACTAACAAAGACATCAAAACCCCAGCTTCAATCATCGTGAACATTGACTCGGATGAAGAAGCAGAAATTGAAGAGTCCCAATCCAAAACCAATAGTACAATCCACTCAAATGCAATAGGACACGCCATAGTAGCAATACCGATACGGGATGAACCTATAAACAGTTGTAACCACCAGATCATAGTTGAAATATCCAAAGTCCCCAATGAAAACTCCGAGCATCAAGGTTCGCATCATGCAGAATGCATTATTTGCAAAACTACTTCAAGCATCTCAAGAGCTTTACCCAAGAGCCAAGCAAGCCAATATGGATTGAAGGAAGATGAAGTTCCATTGGACGCAAGAGTTTGCAACTTATGCAGGTGCAAAGCCCTACGATCCAGATTCACTAATTGCCCAGTTTCCTCCTGCCCAAATGCGAAAATGCAGAGAGTGAAACGGCTGCGTTCACTGCCAATTAAGTGGGTTGACCTCATCGCATCAGTACGAGAGCAACTGCAAGCTGAATTCGGTATGGATGAAACTATGACTAAATGCTGCTCTTTGTGCTACAACCGCATTGTTAGAAAGATCAGTGCTAGTATGGATGTTAGTTCATTCATGACAAATAAGGGGAAAATGAATCAAGCACGGTGCTCCATCTTGAACTGGAGTGACGAAGAAATTCATAAACTGAAAGAAGGCTTGAAACTCAATGGTGTCAATTGGACTCAGGTTGCAGAAGTTGTTGGGGGTGCTAAAACTCCCCAACAATGCATGACATTCTTCTACAAGTATatgaaaaagttgaatcttGAACATCATCTTCCTGCTGATGTCAAgGATGCTGTTTTGGAAGAGAGGAAACCTGCATTGACTGATGAAGAAGAGTCTGGTTCAAGTACTTCTAGttgtgatgaaattgaaggtGGAAGAATTGATGCTGGAGCTGATAGTGATACTGCCAGTGCTCCTTCTCCTCTTCAAAATGCTGGAACGATGGAGGAAGAAAACAAAGACATTTCCACTCCACCACCTCAGCTTATAGAAGAAGGGCGTATTACTATTCCCAATCATGATACCCCTGAGCAAATAGGTACTGTTTCCTCCCCTCAGGGCAAAGGATCTACATCGTCGTCCCTTCTACCACCTGTACTTCTTCCAAATAAAGAAGATTATGACAGCTCAGCCACGGAGACTGCAGACGAGGGTCAAGGTGGTGGTGAAACGGAGTCAGGAATTAACCAGGCTCCCACACCAAAGAGAGATGAAGAACCTTCTTCACCATTGACAGTTAAGGATTTGATGCTCAACGTTATTGAAATgcaattgatgaaaaaccCTCAAGGGAATAACTCAACCAATCCTGGTGGCCCACCTACTATATCATCCATCCTTAAATCTGATAGCAGCATTACTTACAAACAGAGAGAAAGGAACACTAATCGTATAAATGCTGATAACAATTCTTTGGCCACTGTATCTGTAGTCAATACTCAGCATTCCCATCAACCTCCAGTGCAAGACTTGAGGAAAGAAGGCTTGGTTGTTGTTCAGGTTCCACAAAATGTCAGGGAAGTAAGGGAACCTGAAGCTGTAACGCTCGATTTGAGCATCAAGAGACCAAGAGATGCTCAGCCACAGATGAATAAACCTGTCGCCCATCATTCTTCTGCTCAGCCATCCTCGCACAGCGTTTACAGGGTATCACATCAAAATCAACAACAGCAATTGGGTCAGTTACAACAAGCCCAACAGCAGCCTCATCAAGGACATAACCAGCCCCAACACCACCAATCTCAACAACCTAGTGGTGAAGGCTCCAGCTTCTTCCATCAGCAAATCCTACCGCCACCATTGGCTCCAAAACTCTCTCCAGGTGTGATAACTGGAGCCCCTCAAAATAAGCCTCAGTGTGGCTCAATAATACATGGCACTCCTGTCTCAAGTCCAAGTATTTACAACCAGGGACGTTATGATCAGCAGAGTTCTACTCCCATAATTCTACATACGTCGCCTCATAAGGAACCAGGTTCCATAACACAAGgtACACCTGTGCATCAGCGAAGTTCTCTATTTCCTTCTAATTCAGAAGCGCTTTTCAACAAGAGAATGGCACCTCAAGGTTTCTACCCTCCCCGTCTACCTGCATTTAATGTTGATCAACGtcaaattattatgaatgaTTACATTACTTCAAGAGAAATGCATGCACCATCGTCATCTGGTTCTCGAAATGGACGAGATAAGATGTACTATCCTCCAAGTGCAAGGCAAGGTGTAATACAAAGACACAACACTAAGCCACCTAGCCCAGGAGTCAGTCATCATCCACCTGGTTATGAGGCTTTCTCGTCTTTGGTTGATGTAGCATCCAGGCAGCCAAGTCTTCCTGTGCCGTCGCCAATGACGATGTCAATGGGTGAAACGAAAAATATGCCTGAAGATAAGCGTCACCTGCATGGAGAAGGACTTGGAGAGCGCTTCAATAGGGACAGTCCTCATGAAAGgtttcaaAGCCGTGAATCTGAAATGCGTTACATGAAGGAGACCAGTAAAGCCCATAATCAGCCATCTGATAGACGAGATCATCAACCACAATCAGCATCTATGCTGCAGCTTCGTGAGCCAATCCCACATAGTAGGGAGAGTTACTCTTCCCATCATATGGAAAGGGAATTACAGGCACATCAAATGAATATTAGagaacaacaacaacagcaacagAGAGAACGAGATCTTCACAATCATCAAACTCAAAAGATGAGAGAACATCAGATCCATGTTCAGCAGCAACAACAACAGCAGCAGCAGCAACAACAGCAGCAACAACAACGAGATCTCGAATTACGAGGGCAAGTTATTGGTAGTGAACATTTAGAGGTGTATGGGAATCAACCTCAGAGCCTCAGAAGTTCTATATACCAAGGATATGAACCTCAAACGTGGAAATTAAGAAGAGCACTACAACCTAAAGACGTCGAACAACCAATTCATGAAAAAACAGAGGATCATGTAAATCGAGGTTATTATGCTGATCCTCCTGTTCCTCTTTCTCCTTTGGATTATGTGAAAAATAGAATTGCTGAAGTAATGAGAACGTCCGAGGAAGATGGTGGTGTATCTAAAGGTAATGATAGTCCTATATCCTCAGATGTCAATGATGAAATGGAGTCAACACCTGTTGTGTCTTCCAGTCCCTACATCTCCCAAAATCCTCATGCATACACATACCCCTATAGTGCATTAAGTTTAACTACAGGGAGTAGTGCAGGTGTATCTATGGCGCCACAAACGGTTAATAAACAAGGAAATGAGCCTATTCCTGAGCCAGCCCCATTACTTTCTGCCCAATATGAACCACTGTCTGATGAAGATTGA
Protein Sequence
MSPESIQKTAFSTPTYHLEFNRLPFGLRNSPSTFQRLMDSVLRGITNEYCCVYLDDIIVYSTSLTEHINRLEEVFKRLRKANLKIQPDKTEFLRKEIAYLGHIITPEGVKPNPEKIIAIQNYPIPSTPKEIKSFLGLLGYYRKFIRDFAKITKPLTRCLKKGSKINTKETEYVEAFEKCKQLLTNEPILQYPDFSKPFHLTTDASNVAIGAILSQTTNGADLPIAYASRTLCDSERRLSTIERELLAVVWGVQYFRPYLFGRKFKIHTDHKPLQWLYSIKEPGSKLFKWRTKLSAYDFDIEYKKGTLNSNVDALSRVEILNNNDDEPVAKADEAVEAFFESLSPETLHKITNKDIKTPASIIVNIDSDEEAEIEESQSKTNSTIHSNAIGHAIVAIPIRDEPINSCNHQIIVEISKVPNENSEHQGSHHAECIICKTTSSISRALPKSQASQYGLKEDEVPLDARVCNLCRCKALRSRFTNCPVSSCPNAKMQRVKRLRSLPIKWVDLIASVREQLQAEFGMDETMTKCCSLCYNRIVRKISASMDVSSFMTNKGKMNQARCSILNWSDEEIHKLKEGLKLNGVNWTQVAEVVGGAKTPQQCMTFFYKYMKKLNLEHHLPADVKDAVLEERKPALTDEEESGSSTSSCDEIEGGRIDAGADSDTASAPSPLQNAGTMEEENKDISTPPPQLIEEGRITIPNHDTPEQIGTVSSPQGKGSTSSSLLPPVLLPNKEDYDSSATETADEGQGGGETESGINQAPTPKRDEEPSSPLTVKDLMLNVIEMQLMKNPQGNNSTNPGGPPTISSILKSDSSITYKQRERNTNRINADNNSLATVSVVNTQHSHQPPVQDLRKEGLVVVQVPQNVREVREPEAVTLDLSIKRPRDAQPQMNKPVAHHSSAQPSSHSVYRVSHQNQQQQLGQLQQAQQQPHQGHNQPQHHQSQQPSGEGSSFFHQQILPPPLAPKLSPGVITGAPQNKPQCGSIIHGTPVSSPSIYNQGRYDQQSSTPIILHTSPHKEPGSITQGTPVHQRSSLFPSNSEALFNKRMAPQGFYPPRLPAFNVDQRQIIMNDYITSREMHAPSSSGSRNGRDKMYYPPSARQGVIQRHNTKPPSPGVSHHPPGYEAFSSLVDVASRQPSLPVPSPMTMSMGETKNMPEDKRHLHGEGLGERFNRDSPHERFQSRESEMRYMKETSKAHNQPSDRRDHQPQSASMLQLREPIPHSRESYSSHHMERELQAHQMNIREQQQQQQRERDLHNHQTQKMREHQIHVQQQQQQQQQQQQQQQQRDLELRGQVIGSEHLEVYGNQPQSLRSSIYQGYEPQTWKLRRALQPKDVEQPIHEKTEDHVNRGYYADPPVPLSPLDYVKNRIAEVMRTSEEDGGVSKGNDSPISSDVNDEMESTPVVSSSPYISQNPHAYTYPYSALSLTTGSSAGVSMAPQTVNKQGNEPIPEPAPLLSAQYEPLSDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-