Basic Information

Gene Symbol
Kdm5
Assembly
GCA_031894815.1
Location
JAVIWC010002765.1:3139109-3171189[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.1e-25 1.3e-21 78.1 0.0 2 89 435 519 434 519 0.94

Sequence Information

Coding Sequence
ATGGTCAACTGGTGGGCCTGGCCAAAAGGCTTCTTCCAGAACCCTCTTCTGCCACCATCTTCCCGTGTATTCAAAAACCTGAAAGGCAGAGTCCTCATTATCCCAGTTCTTCACGAAGTAGAAGTGTTCATTGGAGACCTCACAATCACTTATGAAAGAAGCCTAGTTGTCGAGTTCTCTTTTTTCACCCTCTCAGACAGCGAAGTTTTTCTCACGCATGCTCCCGGTAAACTAAACGAGGCTTTAGCTCTGCTTGATTTCCGTGTTGAACACACAGGTTTGGTAGCGAAGATCCAAGGGGATCCCGCTCGCCTGGCTGTAGTACTGCTGTACCTCATAGCAACCTACGTCATTGGCGATATGTACTCAGCGAATTTAACGTCACTTCTCACGCGTCCTGCTAGAGaaaagcCTATCAGCACGCTGGAACAGCTCAACTACGCTATGGAGAATAGAAACTTTAAACTGTTGGTTGAAAGACACAGCGCATCGCACGGAGTATTCGAGAACAAGTTGTTGGGATGCGTTGCTGTTGAAGACGATGAAAAACGAACAGTAAATGATGGCACCGGGACCTCCTCACGATCTTCGGGAATACAAGTATTGGGGAACAGATATATAAGGAAAGTTCTGACCTTGTATGTCGATCGATCGATTCCGAATGATTACGGGAACCCCGTTGCTCCACCAGGCGTACATCATTTTCATTTGAGCGAGAAGCTGTACACGAGATACTCCGCTATAGCTCTCCAGATGGGTTGTCCATTTGTTGACCAATTTAACAAGCTGATAATCGTCATGTTCGAAAGTGGCATTCTGAGTAAAATAACGGAAGACGAGTACCAAAAACTAAGAGAGAAACAAGATCCTACTTCTGGGAAGACAGTTAAACGCCAATCTGAAGCTACTGACGAAGTAGGTGAAGGGACTGCTCGATCAGAAGACGATGAAACTCTTAAATCAATGAGCATGAAAACATTGCAAGGAGCCTTTTACGTGCTGATAGTTGGCTGCTCTATAGCAGCAATGGCCTGGGGCAGTAAACACAATATTAGCTACGAATCGTTGGAAGAGTTCTCGTTTATCAGGCCCAAAGAAGCCCCTGTGTACAGACCAACCAAAGAAGAATTCGAAGATCCTTTGGAATTCATTAACCGCATAAGACCGGAGGCAGAAGAATACGGGATTTGCAAGATAATACCTCCTTCCGATTGGCATCCCCCCTTCGCTGTTGATATTGAACAATTTAGATTTACTCCTAGAatacagaaaataaatgaacttgagGCACACACTAGAATAAAACTCAACTTCCTGGATCAAATTGCCAAGTTTTGGGAACTCCAAGGCTCCCCATTGAAGCTTCCATCagttgaaaaacgaattttggatttttatacTCTGCATCAACTAGTACAAAGAGAAGGAGGAGCTCATGGAGTGACACGTGCAAAAAAGTGGGGTAAAATTGCATCACAGATGGGAATGTCTAAGGATAATAAAGGATCTGCAACCACTCTTAGGACACATTACGAGAAGATTTTATTACCGTACGACATATTTATGTCACTTAAGGATGCCAAAAATGAACGCAATGCTgatagtgAAGAGGAGGCGGATATATCCAACACTAGACGCACAAGAGTAAGGAAAACGTGTTCCAATAATGCATCTTATAGCAGGAGGCGTAATGAACGTGATAAATTGGGAACCcctactaaacaaattataGCCATGAAAGAAGAAGATACTAGTGATGACCCActcGCCAAATATGTATGTCACACATGTCTTAGAGGAGATTCTGAAGAAGCAATGTTATTATGTGATGGATGCGATGACAGCTATCATACCTTCTGTCTAAAACCGCCTCTTACATCTATTCCAAAAGGTGATTGGAGGTGCCCTAAATGTATTGCTGAAGTTGTGGCTAAACCATCAGATCCTTTTGGTTTCCGAACATCCAAGAGTGAATACTCTCTTAGAAGATTTGGAGAGAAGGCCGACCAGTTCAAGTCTGATTACTTTAATATGCCTGTACACAAAGTTCCTAGTAACCTAGTAGAAAAAGAATTTTGGCGAATAGTTTCTTCGTTTGATGAAGATGTCACTGTTGAATATGGTGCAGATCTCCACACTGTTGATCATGGATCAGGTTTTCCTACCCATGAGTCTATAAATGAAGATTGTATGAACCCGGATATTTTGGATTATGTTAATTCTAGTTGGAATTTGAACAACATGCCAGTACTTGGAGGTTCTGTTCTCAGCCATATCACTGCTAATATTTCTGGAATGAAAGTGCCTTGGATGTATGTCGGAATGTGTTTTGCAACTTTTTGTTGGCACAATGAAGATCATTGGAGTTACTCCATCAATTATCTCCATTGGGGTGAAAGCAAAACATGGTATGGTGTGCCAGGAAGCAGAGCCAACGACTTTGAGACAACCATGAAGCAAGCTGCACCTGAACTGTTTTCCTCTCAACCTGATCTTTTACATCAATTGACTACAATTATGAACCCAAACGTCCTCATGGAAGCTGGTGTTCCAGTGTGTAGAACAGATCAGGAGGCTGGAGAGTTTGTCATCACATTCCCCAGGGCCTATCATGCTGGATTCAATCAGGGTTACAATTTTGCAGAGGCTGTAAATTTTGCTCCTGCAGATTGGCTCAAGATGGGTAGAGAATGCATTGCTCATTATGCAACGCTGCATCGGTACTGTGTTTTTTCTCATGATGAACTCACCTGTAAGATGGCGGCTGAGGCTGAGGATCTGGGACCACGAGTAGCTATTGCCACTTATCGCGATATGTTGTCAATGGTGAAAAGTGAAAGAGATCTTCGAAAGTCATTACTATACCTGGGAGTGTGTGATGCAGAAAGAGAAGCTTTTGAGTTGGTTCCAGATGATGGGAGATTGTGCGACTTCTGCAAAACCACTTGTTTTCTATCAGCAGTTACATGTGCCTGCAATCCCTCTATATTGTACTGTTTGAACCATATCAAAGAGTTTTCTTGCCCATGTCCCACTGATAAAAAGATACTCAGGTAG
Protein Sequence
MVNWWAWPKGFFQNPLLPPSSRVFKNLKGRVLIIPVLHEVEVFIGDLTITYERSLVVEFSFFTLSDSEVFLTHAPGKLNEALALLDFRVEHTGLVAKIQGDPARLAVVLLYLIATYVIGDMYSANLTSLLTRPAREKPISTLEQLNYAMENRNFKLLVERHSASHGVFENKLLGCVAVEDDEKRTVNDGTGTSSRSSGIQVLGNRYIRKVLTLYVDRSIPNDYGNPVAPPGVHHFHLSEKLYTRYSAIALQMGCPFVDQFNKLIIVMFESGILSKITEDEYQKLREKQDPTSGKTVKRQSEATDEVGEGTARSEDDETLKSMSMKTLQGAFYVLIVGCSIAAMAWGSKHNISYESLEEFSFIRPKEAPVYRPTKEEFEDPLEFINRIRPEAEEYGICKIIPPSDWHPPFAVDIEQFRFTPRIQKINELEAHTRIKLNFLDQIAKFWELQGSPLKLPSVEKRILDFYTLHQLVQREGGAHGVTRAKKWGKIASQMGMSKDNKGSATTLRTHYEKILLPYDIFMSLKDAKNERNADSEEEADISNTRRTRVRKTCSNNASYSRRRNERDKLGTPTKQIIAMKEEDTSDDPLAKYVCHTCLRGDSEEAMLLCDGCDDSYHTFCLKPPLTSIPKGDWRCPKCIAEVVAKPSDPFGFRTSKSEYSLRRFGEKADQFKSDYFNMPVHKVPSNLVEKEFWRIVSSFDEDVTVEYGADLHTVDHGSGFPTHESINEDCMNPDILDYVNSSWNLNNMPVLGGSVLSHITANISGMKVPWMYVGMCFATFCWHNEDHWSYSINYLHWGESKTWYGVPGSRANDFETTMKQAAPELFSSQPDLLHQLTTIMNPNVLMEAGVPVCRTDQEAGEFVITFPRAYHAGFNQGYNFAEAVNFAPADWLKMGRECIAHYATLHRYCVFSHDELTCKMAAEAEDLGPRVAIATYRDMLSMVKSERDLRKSLLYLGVCDAEREAFELVPDDGRLCDFCKTTCFLSAVTCACNPSILYCLNHIKEFSCPCPTDKKILR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-