Clev021169.1
Basic Information
- Insect
- Crematogaster levior
- Gene Symbol
- -
- Assembly
- GCA_901521435.1
- Location
- CABEGB010000613.1:75423-78908[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.003 0.57 11.6 0.4 1 23 118 141 118 141 0.90 2 12 0.0056 1 10.8 4.7 2 23 262 284 262 284 0.91 3 12 4.4 8.4e+02 1.7 7.6 3 23 434 455 433 455 0.95 4 12 1.1 2e+02 3.6 1.1 1 23 506 529 506 529 0.93 5 12 0.00091 0.17 13.3 0.2 3 23 578 599 576 599 0.96 6 12 0.00055 0.1 14.0 0.1 3 23 622 643 620 643 0.93 7 12 0.0058 1.1 10.7 3.6 2 23 702 724 701 724 0.96 8 12 0.079 15 7.2 4.2 3 23 739 760 737 760 0.92 9 12 0.0002 0.037 15.3 0.1 2 23 814 836 814 836 0.94 10 12 0.017 3.2 9.3 1.0 1 23 915 937 915 937 0.98 11 12 0.013 2.4 9.6 2.4 2 23 951 973 950 973 0.93 12 12 0.00077 0.15 13.5 1.1 1 23 1046 1069 1046 1069 0.98
Sequence Information
- Coding Sequence
- ATGTCGTCGGGCATGACATCGTCGCACGAACCCACGACGGCGGAGGCAACGGAGCTGGACAGCGACGGTTCGAGCTGCGGCGAACGCGATGTCTGGAAACGCGTTCGTGGCGATCCCACTGACGCCGGGCCCAAGAAGCGTCGAAAGCAGACCACACCGGTAAGAGTCTCGTCTGGCCTCGTGGGCATGCACGAGGATGCACGCGAAGATGAACGCAAGGACGAGGACGTCGAAGGTAAGCCGTCGTCGCGATCGCCGTTGCTGAGCAACGACCATCACCATCAACaacaccaccaccaccactacCATCACCATTCGCCGTTGTCGAAAGACGAGAATCTGAACAACGAGTTCCGTTGCCAGCACTGCGGCCGGCTCTTCGACAGCGACGAGACGCTCAACGTCCACGTGGACGGTGAGCACGGTGGCGCGAATCGGGCGACGCCGACTGTCGCCATCAAGATAGAGCCGACGCAGCAGCTGGATCCGACTAACGAGGGTCCCGTTAGTCTCTTAAGCGTTAAGAACTTCGCGACCGCGTGGTTGCCGCCCAGCAGCCAACAGCACGTGCAATCGCAGACGCAGATGCAGTCGCAGAGCGATGAAGCGTGGTCGGGCCCAGTCAGTCAGATCGTCACAATGACCAATCACCTACAGACGCTCTCAAGTTTCCCGGGCACTCTCGCACAGTATCTCCCTTTGCCAAGTTTTCCCCTCGCTGATCCTCAGCTCCCTAGAGCCTCCCTCGGTCCTGTGCCGGTCAAGATTTTCAATCCGGACGCGTATTGCGACATGTGCAACAAGGAATTTTGCAACAAGTACTTTCTGAAGACGCACAAGGCGAACAAGCACGGGATCTACGTTGACTCGCTGGCACCAACCGCGGCTATAGATTCTGCTCATATCGTCGGCGGCGGTATATTCGGCGCCGCAAACTTCCACGCAGGTAACGCAAGCGTGAAACTGGAACCGCCGGCGACTCCACCGCAGAAGCGTTTCCGTAACGAGGATTCCACAAAAAAGTACAAGCAGAAAACGCATAACGAGTCGCCGACAGATCAGCAAATTGACGGCCAGCAAATCTCTATGTCGCAGAGCGAAGAAGACCAAGTAACGCCGCGCGACAGTCCCGGCGGTATGGAAGCGCTTCTAAAGCAGGAATACGGCATTGAACAGGAAGATGCGACCTTCATGCCGGCTCCACGACACCTTTCGCCTCAGTCCATCCAACAAGCACGCGATTCTGGTTTCAGTGTCGATCTTCTGCGTAATCTGGGAGTCATAAATCCAGAAGCGTTCTGCGAAATCTGCTGCAAGGAGTACTGTAACAAGTATTTCCTGCGCACGCATAAGATGAAACGACACGGCATCGTCGTGCAGGATAACGAGAAATCGCCCGGCAATCCTGGCGCGATTGTTACCACTTGGCACCAGGTACAGACTAGTCCGCTGAACTTGATCGTGTCTGAAGTCGCCACAACGAGTGCGGATTCTAACGATCGCAGTGGCGAGGAATACGAGTGCAAACCTTGCGATATTCGCTTCCAGACGATCGGTCTGTATCAGGCGCACTGCAGGAAGATACACGAGAGCGAGGAGCGCGGCTCCCCGAAGCAAGAATATGATCTGGACAACTCTGATCAGCGTACCGATTCGATTTCAGAGGACCTTCAGAAATTGCAGACTATGATCATGCAGCTGAACGGTCTGGATTCCGGTAAAGGATTAGCCTGCGCTATCTGCAGCAGGGAATGTGATTCGAGGTCGGCTCTGCGCGTTCACATGGCAACCGAACACAGTATCACCGGTGATGAAGCCCCGTTGTCGCCACAGAAATCACCCACGGCTATTTCGACTATTTTCTGCACTCTTTGCGAGAAGGATTATCCTAGCCAAGATGCACTGAGGAGACACATTAGCGAGGAACATCAACCCATTGTGTCCAGCGCTATTACTTTACCGATACTACCGCCAACGATAATCACCTCTTCCGCCAGTTCGACGCCAACCAGTCAGACTCCAATCAGTCaaacaacgacgacgacgacgacgacgacaacgacgacagaaagaaaaatgacGTCACTGACCCCCACGTCGAGTTACTGTGAGATCTGCAACAAGGAGCTGtgtaacaaatatttcatGAAGACGCACATGCAGCGGATGCACGGCATCGAGATCGAGAACGGCGCGCAGATCGGCggtgttatttgcaatatctGCAATAAGGAGCTATGCAGCAAGTACTTCCTGCGAGTTCACAAGCACAACACTCACGGGATCGTCGACGAGAACACATCGTCGGGATCAACGTCGGGATCAACGTCGGGATTGAACAAACAGGAACCCTATGACGCTGCCGGAATCGAAGACTCGACCTTGAAATCGGAGCAATTGGGCGATCTCAGTCACAGATACTTCTCCCAATTCACCGAGGTATGTCCGATCTGTAGTCGAAGGTTTCGCAGCATCAAATGGCTGAAGGCCCACCTAATGGGCGACCACGGCAAAGCGGGAATCGACAAATGGCGCGAATTGGAGCAACAGTATCAAGCAACGTCCAGAACCAGCGGTAGAAGTGTCGCTCCAGCGAAGAACACGCAACAAACGTCGAATCTGAAGATCCCCAATGGCTTCGAGGTCGCCCAACAGGCCAAGCCTGCCGATTACACGAGTCTGGGAAATCAAATGCTGTCAAATCTTCTCGGTTCCTCGTCCGAAGAACATCAATTGAAGAACTACCGCTGCGGCTACTGCAATTTTACGACCCCTGTGCTATCCTTCCTCTTTCTTCACGAGCGATCCCACGTGAGGTCTCAGGAAAATGTCGAGGGGGATAGAACGCTACAATGCCCGATCTGCTCGCACGACTTCCATCAACCGGAGTTGCTTCATCAGCATCTGCTCGCCAAGCATCAATTCTCTTCTCTGTTGTCGCAATTCCAGCATTCTCtcatgaataattttagatcAGACATCGATGTCAAAACGGGTGACGTCAAGGACAGATCTGATCAGGATTCGAAAAACGACCGTGTGGAATGCAGTCCGCAAATCGAGCGAAACATCCCCGAGCCTGCGAGGAACCAACGACAGGATGACACTGCGGTGCAGGTGACACCTCAGGGTGTGTACAAGTGCGCCCAGTGCGGCTACGCGACGACGAATCTGAATCGCATTAAGAAGCATATGCGGAAGGATCACAAGGCAATCGGCGATCCGACAGAAAGCGTGATCGCCGAGCTGAGCAAGACCCTGAAGGACGTGGCAAACAAGCAGAAGATGCCGGCCTGTTATGCGATGCCGCAAGAATCAAACCCCGACAAGACCATCATGCAGCCGTTCCTAATCGAGGAGCAGGATCTGATGCAGATGGGCGAATCTAGCTCGGCGAAGAGATTCGCACCCGCTCTGGTCTACTTGCCGGTCAAGTCCAGAATCAGCAACGCCCTGACCGCCTCCTTCACTCTCACTCCCGCTTGA
- Protein Sequence
- MSSGMTSSHEPTTAEATELDSDGSSCGERDVWKRVRGDPTDAGPKKRRKQTTPVRVSSGLVGMHEDAREDERKDEDVEGKPSSRSPLLSNDHHHQQHHHHHYHHHSPLSKDENLNNEFRCQHCGRLFDSDETLNVHVDGEHGGANRATPTVAIKIEPTQQLDPTNEGPVSLLSVKNFATAWLPPSSQQHVQSQTQMQSQSDEAWSGPVSQIVTMTNHLQTLSSFPGTLAQYLPLPSFPLADPQLPRASLGPVPVKIFNPDAYCDMCNKEFCNKYFLKTHKANKHGIYVDSLAPTAAIDSAHIVGGGIFGAANFHAGNASVKLEPPATPPQKRFRNEDSTKKYKQKTHNESPTDQQIDGQQISMSQSEEDQVTPRDSPGGMEALLKQEYGIEQEDATFMPAPRHLSPQSIQQARDSGFSVDLLRNLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGIVVQDNEKSPGNPGAIVTTWHQVQTSPLNLIVSEVATTSADSNDRSGEEYECKPCDIRFQTIGLYQAHCRKIHESEERGSPKQEYDLDNSDQRTDSISEDLQKLQTMIMQLNGLDSGKGLACAICSRECDSRSALRVHMATEHSITGDEAPLSPQKSPTAISTIFCTLCEKDYPSQDALRRHISEEHQPIVSSAITLPILPPTIITSSASSTPTSQTPISQTTTTTTTTTTTTERKMTSLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTSSGSTSGSTSGLNKQEPYDAAGIEDSTLKSEQLGDLSHRYFSQFTEVCPICSRRFRSIKWLKAHLMGDHGKAGIDKWRELEQQYQATSRTSGRSVAPAKNTQQTSNLKIPNGFEVAQQAKPADYTSLGNQMLSNLLGSSSEEHQLKNYRCGYCNFTTPVLSFLFLHERSHVRSQENVEGDRTLQCPICSHDFHQPELLHQHLLAKHQFSSLLSQFQHSLMNNFRSDIDVKTGDVKDRSDQDSKNDRVECSPQIERNIPEPARNQRQDDTAVQVTPQGVYKCAQCGYATTNLNRIKKHMRKDHKAIGDPTESVIAELSKTLKDVANKQKMPACYAMPQESNPDKTIMQPFLIEEQDLMQMGESSSAKRFAPALVYLPVKSRISNALTASFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423182;
- 90% Identity
- -
- 80% Identity
- -