Clev021853.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Crematogaster levior
Gene Symbol
-
Assembly
GCA_901521435.1
Location
CABEGB010000646.1:137984-153500[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 4.9 9.3e+02 1.5 0.4 2 13 159 170 158 172 0.79
2 18 0.017 3.3 9.2 2.5 3 21 187 205 186 206 0.94
3 18 0.0041 0.78 11.2 2.7 3 23 216 237 214 237 0.91
4 18 0.00074 0.14 13.5 1.7 1 23 625 648 625 648 0.93
5 18 4.8 9.1e+02 1.5 0.2 5 20 655 670 654 671 0.92
6 18 0.0029 0.54 11.7 0.9 2 23 680 701 679 701 0.97
7 18 0.019 3.6 9.1 1.0 2 21 739 758 738 759 0.93
8 18 4.9e-06 0.00093 20.4 0.0 1 21 916 936 916 937 0.96
9 18 0.00024 0.044 15.1 0.1 3 23 945 966 943 966 0.92
10 18 0.45 85 4.8 3.0 1 23 976 999 976 999 0.93
11 18 0.17 32 6.1 0.2 2 21 1029 1048 1028 1049 0.92
12 18 9.3 1.8e+03 0.6 5.3 1 23 1056 1079 1056 1079 0.94
13 18 0.025 4.8 8.7 4.0 1 22 1090 1111 1090 1113 0.89
14 18 0.00061 0.12 13.8 0.4 1 20 1159 1178 1159 1179 0.96
15 18 0.0091 1.7 10.1 3.4 1 23 1187 1210 1187 1210 0.95
16 18 0.14 26 6.4 0.5 1 23 1285 1308 1285 1308 0.91
17 18 0.11 20 6.7 0.4 1 23 1725 1748 1725 1748 0.96
18 18 0.031 5.8 8.4 0.8 2 23 1773 1795 1772 1795 0.96

Sequence Information

Coding Sequence
ATGGCTAGGATTCAACCATATGAAAGAGTTGTGGACGCTGTACATCATCATATAAGTCCAGTActTGGTATAGAAACCCAAAATATGAAGATCAAGGAAGAACCTATTGATACGACATCGAATACTGATGCAACAGAAGATTGTACATTAGTTAGAAATTGTTATAGTTTAATCGATCATGATTATCACTATcgcgataaattattattaaaacatgatATTTTGTGTAAAGACATAActaatgtagaaaataagCATTCGTTGAATGATGATTCTGCACATTCGAACGATGTAAATAAGGCTGTTAAGTTACAACTTAAGAAACGAAAACGTTCCAATGAAAtctctaataataaaaactctacTCCATTACCTACAACTGGAAATGttaggaaaaaaagaaaacaaagcattacattacattgtAAACCAAAAATACAGCGTACAAATGGGTcggcaaaaaagaaaattacagaATGTGACATATGCTTTAGAAAGTTCCCTTCTCTTTATAGTTGTGAATTTCATAAACAATATTACGAATTTAGTGATATCTTATGCAAGGTCTGTAAAAGACAATTCGCAACACAAAAGAAATTACAGTCTCATGTATGTCGTAAATGGATGAAGAATTGTgatgtaatttgtaatttttgccatCGTCCTTTTAGGACTAAACCATTGCTACAATCTCATTTGTTTCATGTACACAatgagttattatattttaatacaattaaacgTGACACTTCCAGACACaggaatgtaaatataattcctGAAGACGATACTTTAAGAACTAAGGAAgatgaaaaatgtttgaataatCCCAGAGAAGATACTCTTAAATCAGACAAGAGAAGTGCTACACTTACAAATAACGTCATGAAATCTTGGGACAATAATGTaatggaaattgaaaaatcaaagatcgaaaaatcattgaaTAATGAAATGCCAAATAAAAGATTACGGCAACCAACATTAACGGAATATCTTGAACTTTGCAAAAAGAAACGTGATGTTAAACCCAGTCCAAATAAAATGAACATTATGAAAGATAATTTGTCTGTTTGTACTTTATCTCATGATGAGCAAAGTACAAAGAAAGTAGAAGGAAATCCAAGGCCAAAACTTTCAGAAAAACATAATGATCAAATTGATTCTTTATCTACAAAATCAGATAATCTCTCAAAACAAATGGCATGTCCTATTTTAGAACAAGCAAATGTGAAACATGAAGTATGTTTAGAGTCTAAAAAGCCATTTGTAAGACTACATGCGGATGTTGAAATGATGAAATCTTTTCTGGAAAAGCTTTCCGATCCGATTGTCAAAGATGAAATGACCCAAGATCAAACACGTGACAGTGCTTTATATGATCGTGAAATACCTTATAGTTTACGATCTCTACGTGGAGTCTCTTCTGTGGAAGCAGGTTCAAATTCAGGAATGAAGAAGAACAAAAGTGTATCTAAAAAGTCGCGAGTTAATATAGGATCCAATACTAAAAAGGGACAGAACGTTATTGATGAAGAGAAGGAATATATTGATGTTGACAAGATAGACAAGATAGAGTCTAAAGTAGAttggaaaattattatgaCTCATTTTAAGTGTAAGGAGTGTACAGTTCGTTTAACAAGATGTGATGAACGACCAAAAAGTTCTTATCAGACTTCTACAATCGATTCCATGAAAAACACTTCCCTTACTCAACGTGATTCTGTATCGTCTGAAAAAAGTGATACACAAAATAAGATAATGCTCAAAGACTTAGAAATTTCTCTGGAACGTTTAATAACTGTTCCAAGTACAGATACAGAAGAAGCAGAAACAGGATTGGACGTCGAGAAacacatttacaattattttttgtgtaaaatttgtaaaaaaagtttttcttcaaaattggaCAAACGCGCTCATATTAAGTTGTCTCATATGGCATATATGTCAAGCATATGTGGTGCACGATATAAATTGAAGCATAAATTACTTCAGCATTATTTATGCGAACATGTATCTAAACGAAATCAATGTTGTATTTGTGACATGTTATTCTCTAATTACGAAACGTTGGCgcaacatttaaatattcactGTCTGAAGTACATTCAAAGAGACGACGATAAACATCCAATAGATATCGATTTAAAATGCAGcttgaacaaaaaagaaaCCCTTGAAGACTCTTCTAGTTGGAAGTGTCTTCATTGTGTTcattgtaacaaaatattcttgTCGCAATCATCTTTAGAAGTACATCAAAATTATTGCGTAGTACAAAAAAGAATGGAAAAAGATCAGAAAGATTCTATGGAAGAAACAAATGCACACCTAGAGAACGTTCCTGAGATACAGCACAAGAAGAACACCAATGAAAATCTAATCACGTGTGATGAAAGGATTAATCCAGATTTATGTAAAGAGATACAGCACAAGGAGAACACTAATGAAAATCTAATCACATGTGATGAAAGGATTAATCCAGATGTATGTGAACCCTTAAATAACAATTGTGTAGAAGAAAAATCAAACGAACCTCAAATATTGCTTCCTAAAGAGCCAGAGATTAATGAAGCTAATCAAGATTTACTTGTTAATAAGAACTTAAGTGAGCAGAAAACCGAAAGTGTCAATGAATCACAAGACCCTAAAAAGCTTTTGGAATGTAATAATTCCACAATTAATAATCAGAATACTGCTAAAATGCTAAAATCAGATgaaggtacaataaaaacttatCCCTGCGATATATGTGGAAAGCAATTTCAAAATCCTAAGAATTTGGAGATACATATACGCATTTTTAGTTTTACCACCGATATCTGTCCAATGTGTGGCACTGGATTCAGTTCTAAACGCTTTCTACAGACACATATTACTGCAGCGCATGTACCACACATTTCAAAGACTTACAATTTCCATTGCGTATTTTGTAATCAaggttttattaaaaaatacgatCTTCGGCCTCATATATTACACTTACATGGTCAACAAATGCTCAACACACTCACGCGCAATATGAATCTTAATATGAGTCAAGATAAATCCGATCATTCAATTGCACATACCGTGGTATGTAACGTTTGTAATCTGGTATTTGAGACTCATGATCGTTTTGTAGAACACCGTATGTACTATTACAAAAACCATACATTCACGTGTTCACTTTGTTCGCAAAACTTTCAAGGAATGTACATGTTTCATCATCATACCAAACTTGTACATTATTCAGAAGATAAACGCAAGTCATACATTTATATCTGTAACATATGTAACGAGGGATTCAATCATGAGTCACATTTTTATTCGCACAATATACATGTTCATTCGAATGAAGTGAATTTAGTTCAAGAGACTTCAAAAGAATTTGAAGACAAAAATCGTTCTGATTATTCACCAAACATCCAAGAAAAGATTAGAGATTTTTCGGATCAACAGAAACAACTTGAACAGCCCAATGAATATACTTGCAAAATTTGTCAGttgaaatttaaagatataaataatttgataaaacacACAGAATTTTATTCCAATGATGGCGATTTCAAATGTGACAAGTGTAACAGACAATTCAAAACATTTACATTACTTGATTCTCATAAGCAATTAACTCACATTTATCGTGATGTTTACACTGGACATATGTGTGACATTTGTGGCGAAATTTCAGAAACTGctaatatattgaaatgtcATAAGAAACATTTTCATTCCAATATTACCGGTAATAATACggataattgcaaaaatagtGATCAGATATCATCTTCGAATATTACATGCAAGCTAACGACGAAGCCATATGAATCTAAAACTAATACATGTAATGTAACTGAATACAATTGTTTATTCTGCAATATGAAGTTTCCCACTGCTAACGCTATCCAAACACATATTGTTCATGTTCATATGGATGATATGCTAGCTAAACAAGCTATTTTAAAACTTACTCTTcccattattaataaagatgaAATTCGGAAACAATTTGTTACAACTGCTCCAGTACCACCATCATcaatatcatcatcatcgaTATCATCATCATCGATATCATCATTATCTGGGGGTAATTTAACTCCACTTCTTCAAAGATCAACGATTCAACAACCTAATAATACCTTAcctaatttcttaaataatattaatacgaCTCAAAAGGATACGAACGATAAAACTactatcaaattatttaaaaaacctgAATGTtcgaaagataataaaattatagagaaGACTCCAATTCTTTCAAATCCATATGTTAACAAATCGATTTCGACATTTAGTACCATTGCAACAAATACGAAATCAAAAGCGGATACCTCGGTTTCTCCATCTACTGGACCAACAACTTTTAAAACTGTTGCACCAAGTGCTGAATTCGGAAATAATACTTCAGTTCTTCTACCTGCTAAATCAACAACTTTTAGGACTGTTGCACCAAATACTGAATTCAGGAATAACACTTCAGTTCTTCCATCCACTGAACCAACAATATCTAAAACTAATGTACCAAATACTTCTCTTCCCATTATTAATAACGATAACATTCAGAAACAATTTATTGGAACTGTTCCATCATCATCGACATCATCTGAAGATATTTCAACTCGACAACCTAATAGTAATGCCCTACATAATCTTCTAAGTAATATTACGagtcaaaatgaaataaacgataaaactactaccaaattatttaaaaaattgaaaaatgcatATTCGAAAAATAATACGATTATAGAGAAGACTCCACCTTCTTTGATTCTGTGTATTAACAAacctaaaaatatttcaacatCTCATACTATTGTATCAAAAGCGGTTTCCTCCTCAGCTTCTTCATCCACTGGATCAACAACTATTAGGACTGTCGCACCAAGTACTAAATCTGGAAATAACGCTTCAGTTCAGTGCACCAACACTGCACCAACAATATCTAAAACTATTGTATCAAATACTGAATCCAAAGATAACACTAATTCATCAAATACATCTACTCGATGTTATTCATCAAAAAAACCTACAATTAATAAACCCATAACAGCATCTGTATCTCCTTCATCAACTGGACTTTTACCTGCACCCAAAGATATTAAGTCACAAAGTTGGAAAAGCAATGAAATTACAAATCAGAAATCTGAACCAGTGAATAATTATTCATGTCCGTTGTGTCCGCTTGAATATCCATCTTTGATGTTTTTCCACGCTCATCTCAAATACGCTCACGCAGATTCCATTCGACCTGATTGGAATGAAATGATTATGTCACAGATGTTTCCAGCTCGGAACACCtcgataaaatgtttattgtgTCCACTTAGTTTTACAGAAGAGAACAAGTATAAAGACCACTTGAAGAAATCTcatacatattatgtatatatgtcgaattctaaaatgacaaaaaacaATAATGTGCCTCCAATTACACAGACGAACATCAACAGAAAAAATGCAATTCCTGAAACAATTACTTtagatgatgatgatgatgacgataATAACGCCAAGAAAGTATCAGATCAACGATCAGCTGAAACAACAGCCACACTCGATCAAAAGACAGaacaagaaaaagataaaggaCAGAACGAGAAAATTGGTAAATTGAGAGTGAAGCCTTTTGCAAAGATTATTGAGAATTTGTCTAAGGATTCTGTGAAATTCTTATAG
Protein Sequence
MARIQPYERVVDAVHHHISPVLGIETQNMKIKEEPIDTTSNTDATEDCTLVRNCYSLIDHDYHYRDKLLLKHDILCKDITNVENKHSLNDDSAHSNDVNKAVKLQLKKRKRSNEISNNKNSTPLPTTGNVRKKRKQSITLHCKPKIQRTNGSAKKKITECDICFRKFPSLYSCEFHKQYYEFSDILCKVCKRQFATQKKLQSHVCRKWMKNCDVICNFCHRPFRTKPLLQSHLFHVHNELLYFNTIKRDTSRHRNVNIIPEDDTLRTKEDEKCLNNPREDTLKSDKRSATLTNNVMKSWDNNVMEIEKSKIEKSLNNEMPNKRLRQPTLTEYLELCKKKRDVKPSPNKMNIMKDNLSVCTLSHDEQSTKKVEGNPRPKLSEKHNDQIDSLSTKSDNLSKQMACPILEQANVKHEVCLESKKPFVRLHADVEMMKSFLEKLSDPIVKDEMTQDQTRDSALYDREIPYSLRSLRGVSSVEAGSNSGMKKNKSVSKKSRVNIGSNTKKGQNVIDEEKEYIDVDKIDKIESKVDWKIIMTHFKCKECTVRLTRCDERPKSSYQTSTIDSMKNTSLTQRDSVSSEKSDTQNKIMLKDLEISLERLITVPSTDTEEAETGLDVEKHIYNYFLCKICKKSFSSKLDKRAHIKLSHMAYMSSICGARYKLKHKLLQHYLCEHVSKRNQCCICDMLFSNYETLAQHLNIHCLKYIQRDDDKHPIDIDLKCSLNKKETLEDSSSWKCLHCVHCNKIFLSQSSLEVHQNYCVVQKRMEKDQKDSMEETNAHLENVPEIQHKKNTNENLITCDERINPDLCKEIQHKENTNENLITCDERINPDVCEPLNNNCVEEKSNEPQILLPKEPEINEANQDLLVNKNLSEQKTESVNESQDPKKLLECNNSTINNQNTAKMLKSDEGTIKTYPCDICGKQFQNPKNLEIHIRIFSFTTDICPMCGTGFSSKRFLQTHITAAHVPHISKTYNFHCVFCNQGFIKKYDLRPHILHLHGQQMLNTLTRNMNLNMSQDKSDHSIAHTVVCNVCNLVFETHDRFVEHRMYYYKNHTFTCSLCSQNFQGMYMFHHHTKLVHYSEDKRKSYIYICNICNEGFNHESHFYSHNIHVHSNEVNLVQETSKEFEDKNRSDYSPNIQEKIRDFSDQQKQLEQPNEYTCKICQLKFKDINNLIKHTEFYSNDGDFKCDKCNRQFKTFTLLDSHKQLTHIYRDVYTGHMCDICGEISETANILKCHKKHFHSNITGNNTDNCKNSDQISSSNITCKLTTKPYESKTNTCNVTEYNCLFCNMKFPTANAIQTHIVHVHMDDMLAKQAILKLTLPIINKDEIRKQFVTTAPVPPSSISSSSISSSSISSLSGGNLTPLLQRSTIQQPNNTLPNFLNNINTTQKDTNDKTTIKLFKKPECSKDNKIIEKTPILSNPYVNKSISTFSTIATNTKSKADTSVSPSTGPTTFKTVAPSAEFGNNTSVLLPAKSTTFRTVAPNTEFRNNTSVLPSTEPTISKTNVPNTSLPIINNDNIQKQFIGTVPSSSTSSEDISTRQPNSNALHNLLSNITSQNEINDKTTTKLFKKLKNAYSKNNTIIEKTPPSLILCINKPKNISTSHTIVSKAVSSSASSSTGSTTIRTVAPSTKSGNNASVQCTNTAPTISKTIVSNTESKDNTNSSNTSTRCYSSKKPTINKPITASVSPSSTGLLPAPKDIKSQSWKSNEITNQKSEPVNNYSCPLCPLEYPSLMFFHAHLKYAHADSIRPDWNEMIMSQMFPARNTSIKCLLCPLSFTEENKYKDHLKKSHTYYVYMSNSKMTKNNNVPPITQTNINRKNAIPETITLDDDDDDDNNAKKVSDQRSAETTATLDQKTEQEKDKGQNEKIGKLRVKPFAKIIENLSKDSVKFL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-