Clev014343.1
Basic Information
- Insect
- Crematogaster levior
- Gene Symbol
- -
- Assembly
- GCA_901521435.1
- Location
- CABEGB010001402.1:480909-484073[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.8 9e+02 1.6 0.3 1 8 101 108 101 110 0.91 2 15 0.13 24 6.5 2.0 1 23 349 371 349 371 0.96 3 15 0.028 5.2 8.6 1.5 2 23 380 402 379 402 0.92 4 15 1.8e-06 0.00034 21.8 1.5 1 23 408 432 408 432 0.93 5 15 0.0015 0.29 12.6 0.4 1 23 536 559 536 559 0.92 6 15 0.00036 0.068 14.5 3.8 1 23 565 587 565 587 0.97 7 15 0.32 61 5.2 2.6 1 23 593 615 593 615 0.95 8 15 6.8e-05 0.013 16.8 2.1 1 23 620 642 620 642 0.97 9 15 0.013 2.5 9.6 1.6 1 23 655 678 655 678 0.94 10 15 4.6e-05 0.0087 17.3 2.4 1 23 694 717 694 717 0.96 11 15 0.00059 0.11 13.9 0.6 1 23 726 749 726 749 0.98 12 15 0.00052 0.098 14.0 3.2 1 23 755 777 755 777 0.98 13 15 0.0004 0.075 14.4 3.2 1 23 783 805 783 805 0.98 14 15 0.0013 0.24 12.8 4.3 1 23 811 834 811 834 0.97 15 15 0.017 3.3 9.2 0.3 2 23 840 861 839 861 0.96
Sequence Information
- Coding Sequence
- ATGGAAGATAATACGTGTCGTTTGTGTGGCATTAAATCcgaatttagatatttaaagtatatttttgatGAAGTAACCGATTTGGcacagataataaataaaactttaccAATTAAGGTCACACAAGATGATCACTCTAAATATATATGCTTAGACTGTTATGACAAAGTTATCAGTTATTACGATTTTATCCAAAGTATATTGGGATACTCAAAGGAAAATGAAGCAAAAATCTTTGAAGTTGATAAAAATGAGAAGTTAGAAAGTATGGTAATTTCTAAACTGAATAGTGATATGATATATACCTGTCCGAATTGCAGCAAAGATTTAATACTCTTAATAACGAGCAATCCTGAGGATAGTAATTACAAGTTTGAAATTTCGTTGGGTGTTGTGAATCAAATAGAAAAACCAATAGAAGAAAATAGTCAAATATCTGAAGATACAGTGGAATTTGTTAACACTGTCCGTACACAGAAATTAAACACAGAAAGTGAATTACATGAATTGTTATTGAATCATGATATCATTGACGAAGATATAACAAATGATGACAAACAAGATATCAATCGGATACATAGTTCGCAAAATGATACTGATTGCTATAAAAATCCTCGTATCATATTGCAAAGAATTGTATCATGTAAACCGAATAAAGGTGCAAAGAGAAAGTTTCAAGAAAGTGTTTCTATAACTGAATCTATAAATTCTACTAAATTGCGAAAACTAGATACAAGATTAGATGTAAtagaagaattaaaagaagaagacaacaatacgaaaagaaagacgagaaaaaataacaagaaTCTTGCTGAGTCGCaaacatttacaataaaattagataGAAAGCTAGAAGGTGAATTGAACAATGATTATGATAAATCAACTGACTTGATAACATTCCAGCAAGAAAACAACGTATGTCGCGATGgtgatattgaaattaaaggAGATGATAATACAACAGATATGACGAAAACGGAAAGAGAATGCAAAGAAGATGATGCAAGTGACATCGACATTCCAAAAAGTAATGTAAGACACGTGTGTAATTTATGTGGAGCTCGTTATATTTCACAGATGAAGTATAAGTTTCACATGGAGAGACATAGATTAAACAAAGTAGATAAATGTGTTTGTTTAATATGCGacaaagaaacgaaaaatgaAAACTTGTTGTGGGATCACTACCTGCACATTCATAAGAGCCCAACGCAGTATATTTGCTTAGAATGCGACGAAACATTctcaaaaaaatcaaatttaaatgatcatCAGAGAAAATACAGGCACTTtgatgacaaaaaaatgttgaatattGAAACAGATGAGGATAATAATCAGACACAGGAGGTTATtacaaaacagaaaaaaaaatgcactGTCTGcagaaaattgataaaagataCAGATCCTAATGCTAACAACGATCTAGCAACGTGCGCTTCCTGCGAAGACTCCAGTGCATGTATGATAGTCAATGGGGAAGAAACAAAAGCGATATCACAGCGGCAGTACCACTGTTTGAAGTGTCGCAAGCATTTTATGCGCCTGGAGAGACTTGAGTTTCATGAAATGCGACATAATGAGAACATGGATGAGTTTATCTGCAGCACATGTGGTAAGGAGTTCAGTGGAGAAAATTCTTTGTACGAGCATTATCTCTTCGTGCACAAAGGAGCTAGACCGCATGTTTGCGAAGTGTGCGGTAAGTCGTTTCAGCTGAAGGCGCGATTGAAGGAACACCATCGGAAACATACAGGTGAGAAGCCTTTTCAATGTGAAATATGCGGCTTGCGCTCTATGACCACGCACGCACTTAAATTCCACAAGAAGTCTCATTTATCCACTCGCCACACTTGCGAGATATGTGGCAAATCGTTCCTCAAGAAGCAGAATTTGAATGAACATCTGGAGAAGCACTGGAAGAAAGACAAGAATATATCACTTTCGCAAGTATTCACGTGTCCCGTGTGTAACTGTGATTTGCCGACCTTCCGCATGCTGAAGCATCACATGATTGGAATCCATCAGCTCGATCGTCAGGACCCCttaataatgaaacaaaaacCATTGTACGAATGTAACGAGTGTCAGGAGAAATTCAAACATCAAATGTCACTCAAGGCGCACAAGGAAAAAGTGCACGAGGGCAAAATTATACTTCGTATATTTCAGTGTGATGTATGTAAAGCTGAATTCAGAATTAAACAGATGctaataaatcatattaaaagCAAGCACAGCGATGAGAAACAATACAAGTGTGGGCAATGTAATATGAGATTTACAGATATTAAAACCCTATACCATCACATGTCATTACACATCAGTAACAAGCCGTTTACCTGTGAATACTGCAATATGAACTTCAGACGAAAAGATACCAGGGATGCTCATCGTCGCAAACATACGAACAATCGGCCTTACAAGTGCACAGATTGCAATAAGTCGTTCGGTAGCTGTGCTAGTCGTTCAAACCATCGCAAGAAGATTCATGGGGACAACGAGACGGAGTGTCCAGAATGTGGAGAGAAATGCGGTGATACACAGGATATCAGAATTCATCTAAACAATCATCTCGGCGAAAAATTGAATAAGTTAGAATCCACGTAA
- Protein Sequence
- MEDNTCRLCGIKSEFRYLKYIFDEVTDLAQIINKTLPIKVTQDDHSKYICLDCYDKVISYYDFIQSILGYSKENEAKIFEVDKNEKLESMVISKLNSDMIYTCPNCSKDLILLITSNPEDSNYKFEISLGVVNQIEKPIEENSQISEDTVEFVNTVRTQKLNTESELHELLLNHDIIDEDITNDDKQDINRIHSSQNDTDCYKNPRIILQRIVSCKPNKGAKRKFQESVSITESINSTKLRKLDTRLDVIEELKEEDNNTKRKTRKNNKNLAESQTFTIKLDRKLEGELNNDYDKSTDLITFQQENNVCRDGDIEIKGDDNTTDMTKTERECKEDDASDIDIPKSNVRHVCNLCGARYISQMKYKFHMERHRLNKVDKCVCLICDKETKNENLLWDHYLHIHKSPTQYICLECDETFSKKSNLNDHQRKYRHFDDKKMLNIETDEDNNQTQEVITKQKKKCTVCRKLIKDTDPNANNDLATCASCEDSSACMIVNGEETKAISQRQYHCLKCRKHFMRLERLEFHEMRHNENMDEFICSTCGKEFSGENSLYEHYLFVHKGARPHVCEVCGKSFQLKARLKEHHRKHTGEKPFQCEICGLRSMTTHALKFHKKSHLSTRHTCEICGKSFLKKQNLNEHLEKHWKKDKNISLSQVFTCPVCNCDLPTFRMLKHHMIGIHQLDRQDPLIMKQKPLYECNECQEKFKHQMSLKAHKEKVHEGKIILRIFQCDVCKAEFRIKQMLINHIKSKHSDEKQYKCGQCNMRFTDIKTLYHHMSLHISNKPFTCEYCNMNFRRKDTRDAHRRKHTNNRPYKCTDCNKSFGSCASRSNHRKKIHGDNETECPECGEKCGDTQDIRIHLNNHLGEKLNKLEST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -