Basic Information

Insect: Crematogaster levior
Gene Symbol: -
Assembly: GCA_901521435.1
Location: CABEGB010000213.1:166680-171950[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0002 0.037 15.3 3.9 1 23 234 256 234 256 0.98

2 11 0.31 59 5.3 11.7 2 23 263 284 262 284 0.91

3 11 4.6e-05 0.0087 17.3 6.6 1 23 290 312 290 312 0.99

4 11 0.00056 0.11 13.9 1.6 1 23 318 340 318 340 0.95

5 11 6.9e-07 0.00013 23.1 1.8 1 23 346 368 346 368 0.97

6 11 2.1e-05 0.0039 18.4 1.1 1 23 374 396 374 396 0.97

7 11 6.1e-05 0.011 17.0 1.6 1 23 401 423 401 423 0.97

8 11 1.8e-05 0.0034 18.6 0.0 1 23 429 451 429 451 0.96

9 11 7.3e-05 0.014 16.7 0.1 2 23 463 484 462 484 0.96

10 11 1.2e-06 0.00023 22.3 2.0 1 23 550 572 550 572 0.97

11 11 2e-05 0.0037 18.5 4.6 1 23 582 604 582 604 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0002	0.037	15.3	3.9	1	23	234	256	234	256	0.98
2	11	0.31	59	5.3	11.7	2	23	263	284	262	284	0.91
3	11	4.6e-05	0.0087	17.3	6.6	1	23	290	312	290	312	0.99
4	11	0.00056	0.11	13.9	1.6	1	23	318	340	318	340	0.95
5	11	6.9e-07	0.00013	23.1	1.8	1	23	346	368	346	368	0.97
6	11	2.1e-05	0.0039	18.4	1.1	1	23	374	396	374	396	0.97
7	11	6.1e-05	0.011	17.0	1.6	1	23	401	423	401	423	0.97
8	11	1.8e-05	0.0034	18.6	0.0	1	23	429	451	429	451	0.96
9	11	7.3e-05	0.014	16.7	0.1	2	23	463	484	462	484	0.96
10	11	1.2e-06	0.00023	22.3	2.0	1	23	550	572	550	572	0.97
11	11	2e-05	0.0037	18.5	4.6	1	23	582	604	582	604	0.97

Sequence Information

Coding Sequence: ATGTGTACCACTCCTGGGAATGCAGGCACAGGATTCGGGTATGCTTGGTCCTTCGGTGGGCCAGGGACAGAGACCCGAGAAAATGCCCAGAGTGAACTCGCTACAAACATCAGTTACGCTGTCAACAATAACCAGGATCAAGGTTCCAGTCAGAAGATACAAGTCGATATCAAGCCAACCAAGGTTACCACTACCACTCATCGTCGTCCGATGTTTGCGATGAACGAAAGTTGTCAGCAAACACCTACTACCCATCACGGCCATACGGGCGGAGCGCATAATCAAACAACCCATGGCACTCATGTTCGCACTAAAAAGCATCACGATGTATTTTCATTAACATGTGACAAAGGGGGATGTAATTGCGATGCGGCCCATCCTACACCCCCGCCTTCCTCCTTATTCTCAAACACTTTAGTTTTTGCCACAACAGCCGACAAGCACGCCATGAGTAAGCATTTCATGACACCAATCGGACCACTGCAGCTTACTGCTGAAGAGTGCAATGAGATCTTAATGAAGAGAGCAGCTGCTGCATCCAATCAAGCCAATGCAGGGAATAATGTTGCAACAAGTCAGACGGACAATACCGCTCATTTCGGGCATGTTTTGACCCATGTGAATACAACGCAAATCGAGGCGAAAGCCAAACAGCAACAAGATATGGGAAGTCAAGTCCGTGTACCTAAAGAACGACCATATTCTTGTTCAGAATGTGGGAAATCCTTTCTTCTGAAGCATCATCTTACAACACATGCGAGAGTACACACTGGCGAACGCCCACATATTTGCATTCATTGTGGCAAAAGTTTTGCGCACAAACATTGTCTTCATACACATCTGCTATTGCACAGCGCCGACAGACCGTATCAATGTCGtgaatgtaaaaaatcttTCACACTGAAACATCATCTTGTAACACATACTCGCGTGCATACACGGGAGCGGCCGTTCATCTGTCAAGAATGTGGAAGAGCGTTTCCTCTAAAACGTCATTTAGTAACGCACAGTAAGTTCCACTCGGGGGAAAGACCTTACGTTTGTGAAGAATGTGGGGAATCATTTTCACAAAAGGATCATCTTACTATGCATTCACGCTTCCATGGCAGCCTACATCCATTTGTTTGCCACGATTGCGGTGCAACTTTTCAGAGAAAGTTTGAGCTAGTTAATCACGGCCGACTACATGGCAGAGTTCCACATTCGTGTACCGTTTGTGGAAAGGAATTTCTGCAGAAGAGAACACTTTTAGCTCATATGCGTTTACATACGGGTGAAACACCCTTTGCTTGTACCGTTTGTGGAGAAGCATTCCCTCGGAAAGCAGACCTGGTCGCTCATTCTAAGATTCACAATAATAATGCAAATACTGATGAAAAGTCTCTTACATGCAGAGAATGTGGGTTGGACTTCCCTAATCGAGAAGCTCTAAATTTGCACCAGAGGTTACATACTGGTGATCGAACACTTGTAACGGACCTTTGTGGATTAGCAGCTGCTTTTCAGCAAACTCCAGCACATTTCCTTACCCCAAACACCCCAGGAGCACATCAGatgAACGGACCGATAGGAACGCCTGGTGTCAGTCATATGCATGGCGCGACGCAAACGTCACCGCCAGTGGGTACAGGACCAAAACCTAAGCCACACATTTGTCCTGATTGCGGTCGCGGTTTCGCACAAAAACACGGCTTGTCACAGCATCAACGACGTCACACAGATGGCAGTTGCCACATAAGATCACACGTATGTGACAAATGTGGCAAAGCCTTCTTCCAAAAGAATCATTTGTTATTACATCAACGTCAGCATATGGATCCGCCACCAAGTATACTTAGACAACAACAAAGACAAGCTGCCCAAGCTGCGGCTCAGCAAgcgcaacagcagcagcaacaacagcagcaagcacaacagcaacaacagcagcaagttcagcagcaacagcagcagcaagtGCAACAACAAGTACAGCAACAACCACCGCAACAGCAGCAAACGTGTACTGTCGATACAAAAACGATTCAACTACAGGCAATACAGCAGCAGGTACAACAACAGGTGCAACAACAAgtgcaacagcagcagcagcagcaacagcagcagcaacagcaacaacagACGCAGCAACAACAAGCATGTTCCGTGGACGCTAAAGCAATACAGTTGAATGTCACCATGTGA
Protein Sequence: MCTTPGNAGTGFGYAWSFGGPGTETRENAQSELATNISYAVNNNQDQGSSQKIQVDIKPTKVTTTTHRRPMFAMNESCQQTPTTHHGHTGGAHNQTTHGTHVRTKKHHDVFSLTCDKGGCNCDAAHPTPPPSSLFSNTLVFATTADKHAMSKHFMTPIGPLQLTAEECNEILMKRAAAASNQANAGNNVATSQTDNTAHFGHVLTHVNTTQIEAKAKQQQDMGSQVRVPKERPYSCSECGKSFLLKHHLTTHARVHTGERPHICIHCGKSFAHKHCLHTHLLLHSADRPYQCRECKKSFTLKHHLVTHTRVHTRERPFICQECGRAFPLKRHLVTHSKFHSGERPYVCEECGESFSQKDHLTMHSRFHGSLHPFVCHDCGATFQRKFELVNHGRLHGRVPHSCTVCGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKADLVAHSKIHNNNANTDEKSLTCRECGLDFPNREALNLHQRLHTGDRTLVTDLCGLAAAFQQTPAHFLTPNTPGAHQMNGPIGTPGVSHMHGATQTSPPVGTGPKPKPHICPDCGRGFAQKHGLSQHQRRHTDGSCHIRSHVCDKCGKAFFQKNHLLLHQRQHMDPPPSILRQQQRQAAQAAAQQAQQQQQQQQQAQQQQQQQVQQQQQQQVQQQVQQQPPQQQQTCTVDTKTIQLQAIQQQVQQQVQQQVQQQQQQQQQQQQQQQTQQQQACSVDAKAIQLNVTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899020;
90% Identity: iTF_00684308;
80% Identity: -