Clev004954.1
Basic Information
- Insect
- Crematogaster levior
- Gene Symbol
- -
- Assembly
- GCA_901521435.1
- Location
- CABEGB010000958.1:2771-4501[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-07 6.5e-05 23.4 0.1 4 35 39 69 38 72 0.90
Sequence Information
- Coding Sequence
- ATGAAAAataaaagcaaaaaagtcgagacaaataaaaaagcgaagaaagaaacagttaaaaagaaagctaccaaaaagaaaagaagtacaacaagaaaaaattattctcttgCGGCTTTACAAAGTGCATTGGATTCAATGAAAAATGGGAGTACGATCAGGCAGGCTGCGAAAACTTTTGGGATTCCTCGCACAACGCTAGcaagaaaattatcttttcctgACAAAATTAACTGCACAAGTGGCCCACCGACTGTACTGTCTAAAGAAGTGGAAGATGAAATTGTGTCTTGTATAATATACCGAGCCGAAAGAGCAAATCCTATAAATAAAGATGAATTGTTAGATGCTGTGCAACATTAcgtaaaatctttaaatttggAAACTGTTTTTGTTAATGGCAGACCAGGACGACACTGGTTagaagaatttttcaaaagacACTCTAATCTGACGGTCAGAGCggctcaaaatttaataaaagcacGTGCAgacgtcactgaagaggattTGAGAGAATGGTTCTCAGAAGTCCAagaatttttacagaaaaaaaatctgttgACTTTAACACCTTCTCAAATATATAACTGCGATGAAACGAGTATAGAGTTATGTCCAAAAGCCAAAAAAGTCATTACTGTAAAAGGATCTAAGAcagtgtacaaaaaagttgaTGCTGATGAGAAGGGATGTTTTACAACAATGTTTATGTACAATGCTGAAGGAACTCGTGCTCCGCCTATGgtaatgtacaaatataaagaaGGTGTACccgaaaaagttttaaaaaactgtCCTAGTGGTTGGGGATTAGGAAACTCAGACAGTGGTTGGCAAACTGCTGAAACTTTTTACGAATATAtcgtaaatgtattttatccATGGTTAGTAAAAAACAGTATTGATTTTCCAATTATAATCTATCTAGATGGACATTCTTCTCACACGTCAATAccacttattaaattttgtcgaGAGCATTGCAttgagttaattaaattatttcctcACTCAACGCACATTTGTCAACCACTAGATGTGGGTTTTTTTGCTCCCTTTAAAGCAAGCTGggaaaaaactttaaataagtGGAAggcagaaaataatataagccGTTTGAGAAAAGAGCACTGTCCTAATGTTATCAAAAAAACACTAGAAAATATGAGGGATGAGTCTGCTATAGTTAAGAAAGCATTTGAATGTACAGGATTAATGCCTTTTAATCCAAATGCACTCGATTACGacatttttagtaaaaagaagaaaaaaaaagctgttgaaaaaaaggaGGAATCTCGTGCACAATGTagtaattttgatttatttgaaaaatcattaGATGATCTAAATTTACTTCACGAGTTTAAACAAGCAGAACCAAGTGAATCATGGAATGGTGACCAAAAGCATCAGAGATTATTTCAGTATtggttaaaattaaaaagatcagAAAATGAAAGTTCAAACTTTCAAgaacaagagaaagaaaaagatttgacGCCATGTGAAGAAGTTCCTGGTACTTATCTCGTTACAACCATAAGCAAATATTAA
- Protein Sequence
- MKNKSKKVETNKKAKKETVKKKATKKKRSTTRKNYSLAALQSALDSMKNGSTIRQAAKTFGIPRTTLARKLSFPDKINCTSGPPTVLSKEVEDEIVSCIIYRAERANPINKDELLDAVQHYVKSLNLETVFVNGRPGRHWLEEFFKRHSNLTVRAAQNLIKARADVTEEDLREWFSEVQEFLQKKNLLTLTPSQIYNCDETSIELCPKAKKVITVKGSKTVYKKVDADEKGCFTTMFMYNAEGTRAPPMVMYKYKEGVPEKVLKNCPSGWGLGNSDSGWQTAETFYEYIVNVFYPWLVKNSIDFPIIIYLDGHSSHTSIPLIKFCREHCIELIKLFPHSTHICQPLDVGFFAPFKASWEKTLNKWKAENNISRLRKEHCPNVIKKTLENMRDESAIVKKAFECTGLMPFNPNALDYDIFSKKKKKKAVEKKEESRAQCSNFDLFEKSLDDLNLLHEFKQAEPSESWNGDQKHQRLFQYWLKLKRSENESSNFQEQEKEKDLTPCEEVPGTYLVTTISKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00385227; iTF_00385229;
- 90% Identity
- iTF_00385227;
- 80% Identity
- -