Clev032615.1
Basic Information
- Insect
- Crematogaster levior
- Gene Symbol
- -
- Assembly
- GCA_901521435.1
- Location
- CABEGB010001181.1:55142-57007[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-09 1.1e-06 29.1 0.0 2 43 65 104 64 106 0.88
Sequence Information
- Coding Sequence
- ATGTCCCTCAATTCTCGCGTGAAAATGGGAAAAACTACTAAcaaatctcaaaaaaataaaccgagcaaaacaaataaaaaaaaatccgcaAATTTGAGTGACACCAGTTCTAAGGCTCCCAAAAAGGGTGTTGTTTTAGTTAATACGTGTAAGgtttcaaaaaaaaagaaatcgtcGCGTATAAATTATTCGCCTGATGATGTAATTAATGCTTTAAAAGCTGTTGACACAGGTGTTTCATTAAGGAAAGCTGCTGCAGCTTATGGAGTGCCAATCGCTACACTTTccagaaaaaaaggaaacccTGAGACATCCAAACAAAAAACTGGTCCACCAACAGTATTTTCGGAtactgaagaaaaaaaagtaactgaCTGGATTTTGTTTCGAGCTGAACGAGGGTTACCAGTAACTAAAACTGAACTATTAGATTCTATCCAACAATATGTGAatcaatcaaaaattaaaaatccatttaTTGATGGCCGCCCGAGTCGACATTGGTATGAGGGTTTTCGAAAACGATACCCTCGATTGTCAATCCGAAAACCTCAAAATTTGACTCACAGTAGAGCAGCTGTAACCAGCGATGACCTGAAAGATTGGTTTGATGAACAGAGGAACTATTTaagtgcaaaaaaattaatggatatTTCTTCTACCAGGATTTTCAATTGCGATGAGACTTATGTTAGTTTATGCCCTCCTTCAGAGAAGGTATTATTAGATAAAGGAAGCCGTTCTGCTTATAAGGTGGTAGATTCTGAGAAAGAAGGCTTCACTGTACTGTTCATGTACAGCGCTAATGGTGATCGCGCACCTCCCATGCTCATGTTTTCATATAAAACAGAAGTCCCagagaaaattgttaaaaattgtcCTGAAGGTTGGGGTGTCGGTCTCTCAGATAATGGATGGATGACTTCTGAGTCATTCTATGAGTATGTAACTAATATATTCTATCCATGGTTGGTGAAACAAGAAACGGAGTTTccaattgttttatatttagataatcATTCCTCACACATGACTATGCCTCTGGTTACATTTTGTCGGGAAAAGGGTATTGAGTTGATTGGACTTGTTCCCAACTCAACCCACATAATGCAACCACTCGACATTAGCTTTTTCCACCCGTTTAAAGAAACTTGGAAAAAAGCTGTTCCaagatggaaaaatttaaagaatgttGCCcgagtaaaaaaagaagattttccATTAGTTTTACAGTTCGCTTTAAACAatatgaaagaagaaaaaaatgctgtTATTAGTGGATTCAAAGCTGCAGGGTTGTATCCTTTTAATCCCTCTGCTGTAGACTACGacgtatttaataaaaaaaagaaatcgaaaACAGCTGTAACTGAAGAAAAAATGCAAGACAAATTGACTGAAGATAAACAAAAGCATCTATCAActtttgaaaacaatttatCGAAGGATCTTTTGCAGGAGTTTAATAATGCTTGGATGAATCAGACGTGGCCCGGCGATTTACAAATGAGAGGCTTGTACCAATATTGGCTCGATATCAGTGGAAAACCTGGTAAAAGAATTAACAGCACttcattttaa
- Protein Sequence
- MSLNSRVKMGKTTNKSQKNKPSKTNKKKSANLSDTSSKAPKKGVVLVNTCKVSKKKKSSRINYSPDDVINALKAVDTGVSLRKAAAAYGVPIATLSRKKGNPETSKQKTGPPTVFSDTEEKKVTDWILFRAERGLPVTKTELLDSIQQYVNQSKIKNPFIDGRPSRHWYEGFRKRYPRLSIRKPQNLTHSRAAVTSDDLKDWFDEQRNYLSAKKLMDISSTRIFNCDETYVSLCPPSEKVLLDKGSRSAYKVVDSEKEGFTVLFMYSANGDRAPPMLMFSYKTEVPEKIVKNCPEGWGVGLSDNGWMTSESFYEYVTNIFYPWLVKQETEFPIVLYLDNHSSHMTMPLVTFCREKGIELIGLVPNSTHIMQPLDISFFHPFKETWKKAVPRWKNLKNVARVKKEDFPLVLQFALNNMKEEKNAVISGFKAAGLYPFNPSAVDYDVFNKKKKSKTAVTEEKMQDKLTEDKQKHLSTFENNLSKDLLQEFNNAWMNQTWPGDLQMRGLYQYWLDISGKPGKRINSTSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01495718;
- 90% Identity
- iTF_00385214;
- 80% Identity
- -