Clev003846.1
Basic Information
- Insect
- Crematogaster levior
- Gene Symbol
- -
- Assembly
- GCA_901521435.1
- Location
- CABEGB010001215.1:21408-23113[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.8e-12 4.5e-09 36.7 0.0 2 37 16 52 15 58 0.90
Sequence Information
- Coding Sequence
- ATGCCAAAATTTAAAGGAAGAATCAGTAATAAAGGCAAGTGGGATGAAAATAGAATGAAGGAGGCTATCAAATGTGTTAACGAAGGCAAGTTATCAATAAGACTAGCCGCTAACAGATATAATGTGCCACGAAGTTCTCTTCATGACCGTGTTAAAGCAATGAACAGTGGCAAAGAAGTAATTCTTCAACCAAAATTAGGCCGTTTTGATTGCACATTTTCTGAACACCATGCAATGCAACTTCataatcatattaaagaaCTAGACAACCGTCTAATGCCATTAACTAGActggaatttttaaaactggCGTTTGATTTAGcagaaaatctaaaaattcctcatcgatttaataaagaaaagggAATGGCAGGAAAAgactttttttacagttttacgaAGAAATATCCAGATGTTGTTCTAAGAACTCCTGAATCAACTAGCATATCGCGGGCTGTTGGATTTAATAAGCCACAAGTTGACCGTTTTTATGATCTGCTTAATCAACTTctagaaaaatacaaatttccTGCCTCTCGGATTTACAATGCTGATGAAACGGGAGTATCAAATGTACACAAAAATGATAAAAAAAAAATGGACAAAAACGGTCGTTTAATGATAGGAGCTCCACCTCAGAGTATCGCAATTCCACATGAGAGTGGATGGATGAATGGTGAGATTTTTTTACAGTGGTTGCAACATTTCAAACAGCATGTGCAGCTTTCAAAGGAAAATCCTGTCCTCTTGATCTTAGATGGGCATGCTAGTCACAAAGAGTTAACAGTAATAGAATATGCTCGCAAGAATCATATTCATATGCTTAGTACGCCGCCACATACTACACATAAACTACAGCCTCTCGATAAGACATTTTTCAAACCTTTCAAATCTGCGTATGCTTCGGCAAGTGCAATATGGATGAGACAAAATCCTGGAGCTAGGATTACTGATTACGATATTGCTGTACTTGTAGCTTCATCCTTTACTAAAGCAGCTAGGCTCGAAATAGCCCAAAATGGATTTAAATGCACTGGAATTTATCCTTTTAATTGTGAAATTTTCAGtgatatcgattttttacCAGCTTCGATGACAAATATTGCTCAGGAACTGATACCACTTTTCACAGAAAATAATTCCAATCAACCTTCTACCAGCCGTGTCACACAGCTTTCTGAACCAGCACTTTCAATCAGCACagtcaatttattaaaacaattatcacCTCTTCCTGATGCGTCTAAAAAGCATCTTATAACGCGCTCTCGAAAAACGcaaaaaagtgaaattttaaCATCTTCTCCACACAAGGATTCTGCAGCGAAAAATAAAGCCCTAAAGGAAAGGACTAAAGGAAAGAAGCTAAacacgaagaaaaaaattcaaactgttTCTCGTCAAGATCGTGATAAAGATACAGAATGTATCATATGTGGGGAAACTTTTGAAGAAAACTGGATTCAATGCCATAAATGCAAAGAATGGGCTCATGAAGCTTGCGTTGACATTGATccatcaaatatttattactattgtGATGTTTGCAAAGCCAAAAAACGCTTAGGCCATCGTTAA
- Protein Sequence
- MPKFKGRISNKGKWDENRMKEAIKCVNEGKLSIRLAANRYNVPRSSLHDRVKAMNSGKEVILQPKLGRFDCTFSEHHAMQLHNHIKELDNRLMPLTRLEFLKLAFDLAENLKIPHRFNKEKGMAGKDFFYSFTKKYPDVVLRTPESTSISRAVGFNKPQVDRFYDLLNQLLEKYKFPASRIYNADETGVSNVHKNDKKKMDKNGRLMIGAPPQSIAIPHESGWMNGEIFLQWLQHFKQHVQLSKENPVLLILDGHASHKELTVIEYARKNHIHMLSTPPHTTHKLQPLDKTFFKPFKSAYASASAIWMRQNPGARITDYDIAVLVASSFTKAARLEIAQNGFKCTGIYPFNCEIFSDIDFLPASMTNIAQELIPLFTENNSNQPSTSRVTQLSEPALSISTVNLLKQLSPLPDASKKHLITRSRKTQKSEILTSSPHKDSAAKNKALKERTKGKKLNTKKKIQTVSRQDRDKDTECIICGETFEENWIQCHKCKEWAHEACVDIDPSNIYYYCDVCKAKKRLGHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00128109; iTF_00129653; iTF_00128889; iTF_00385213;
- 90% Identity
- -
- 80% Identity
- -