Basic Information

Insect: Crataerina pallida
Gene Symbol: -
Assembly: GCA_949710015.1
Location: OX453291.1:25761848-25763500[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0069 0.47 11.0 4.7 1 23 218 241 218 241 0.94

2 9 3.2e-06 0.00022 21.5 4.2 1 23 274 297 274 297 0.96

3 9 0.00029 0.02 15.3 1.1 1 23 306 328 306 328 0.98

4 9 9.5e-05 0.0064 16.9 0.5 1 23 335 358 335 358 0.97

5 9 0.0023 0.16 12.5 1.7 1 23 362 384 362 384 0.96

6 9 0.1 7 7.3 2.1 3 23 394 415 392 416 0.93

7 9 0.0002 0.014 15.8 0.2 1 23 422 445 422 445 0.96

8 9 2e-06 0.00013 22.2 0.5 1 23 451 473 451 473 0.96

9 9 0.00056 0.038 14.4 8.0 1 23 479 502 479 502 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0069	0.47	11.0	4.7	1	23	218	241	218	241	0.94
2	9	3.2e-06	0.00022	21.5	4.2	1	23	274	297	274	297	0.96
3	9	0.00029	0.02	15.3	1.1	1	23	306	328	306	328	0.98
4	9	9.5e-05	0.0064	16.9	0.5	1	23	335	358	335	358	0.97
5	9	0.0023	0.16	12.5	1.7	1	23	362	384	362	384	0.96
6	9	0.1	7	7.3	2.1	3	23	394	415	392	416	0.93
7	9	0.0002	0.014	15.8	0.2	1	23	422	445	422	445	0.96
8	9	2e-06	0.00013	22.2	0.5	1	23	451	473	451	473	0.96
9	9	0.00056	0.038	14.4	8.0	1	23	479	502	479	502	0.96

Sequence Information

Coding Sequence: atgcttCCTTGTCGCTTATGCACACAAGCCAGTAATGATTTTAAAACGATATTTGATGAATGTGGACAcgaaagcaacatttatactATTATTGTACGATATTTTGACCCCATGTTATTAAATTCAAGTGTGATGCAGGAATCGAAAGTTATTTGCATTAATTGCTGGgatcacataaataaattctaCAATTTTGAACAGTCCATACTGGCAATTCAAACTAAGTTGCAGGAAGACTCCAAAATTGTCTTACCATtcataaaaactgaaaatgaaattcagaatgaatttaaaattgaacgcTCGGAAAATGAAGAAGAGGATGTTGAGAAAAAGAAACCAAATTTAGATTATAGCAGTGATGATGATAAACCATTAATATTGATTGCAAAATATAATCCTTCTATGCGTACCTTGGGCAGGGATTCTAAAAgatgtaaaagaaaaactgcTATGGCCAAGAACAGTAAAAAGTTCGGTAAAAAATCACATACAAATAATGATGgtggtaataaaatattggaaCATGTGAAACCGGAAGGGGTTACATGTTGTGACGCCTCAAGTTCTACTGCgaaacataataataacaacaaacgtTTAATGAAATCCCAACAATATGATGAATTTATTTCCCAATGGAAGCAACACTTTGATTGTGATCAGTGCAATGTGTCATGCTCTAATCTAAGTCAATTTCGAAAGCACTTCAAGCTAAAACATCCACAAGccaaattttacataatatgCTGCAGTAGGAAACATGTTGGTCGCTGTCAAATGGTAGAACATATACGGTGGCATATTGATCCAAATGCATTCAAGTGTGACACGTGCGGTAAGTGTACCTCGAGTAGTCGCAATttgaaaaaacatattcaggAACGGCACACCGAAGAAGCCCAAGAACGACGCTACGAATGTCATATATGTCAGAAACGTTTTGCCCTGAAAGGCATTCTAAAATCTCACATTGACACACATGTGACCGGTAATAAGGATCATGTGTGTAAAAGTTGTGGTAAAGGATTCGTGTTAGCATCCCGCTTGAGGGCCCACGAGCGCACAGTACATAACGTCGACCATGTGTGTGATCAATGCGGTAAAACTATACACGGTAAATACGCCCTAAAAAATCATTTGCTAGAACATGCTGGTATCATGAAACCCAAATGGGCGTGCGATCAATGCAGTGCCGAATTAACTTCACATTCTGGTTTAAAGCGACACAAAGAATCTTTCCATCATGATGGCAATACAGTGTATGTTTGTAGTGACTGTGGCAAAATATCGCCATCAAGAGTTGCACTGTTGAAGCATAAAAAGTATGTACATCAAGCAATACGAAGACACAAATGCACCATTTGTGACAAAGCATTTAAAATGCCTACAGAACTAAAAGAGCACATGGCAGCTCATACTGGTCAAGATTTATATCAATGTCCTCATTGCCCAAAAACGTTTAAGGCCTGTTCGAATATGCACCATCATAGGAAAGGAGCTCATCCCATAGAATGGGCAGAGGCTCGACAAAATAGATTACAAATTAATAAAGTTGCTACTAATCATGATTcaaataaagtaattttataA
Protein Sequence: MLPCRLCTQASNDFKTIFDECGHESNIYTIIVRYFDPMLLNSSVMQESKVICINCWDHINKFYNFEQSILAIQTKLQEDSKIVLPFIKTENEIQNEFKIERSENEEEDVEKKKPNLDYSSDDDKPLILIAKYNPSMRTLGRDSKRCKRKTAMAKNSKKFGKKSHTNNDGGNKILEHVKPEGVTCCDASSSTAKHNNNNKRLMKSQQYDEFISQWKQHFDCDQCNVSCSNLSQFRKHFKLKHPQAKFYIICCSRKHVGRCQMVEHIRWHIDPNAFKCDTCGKCTSSSRNLKKHIQERHTEEAQERRYECHICQKRFALKGILKSHIDTHVTGNKDHVCKSCGKGFVLASRLRAHERTVHNVDHVCDQCGKTIHGKYALKNHLLEHAGIMKPKWACDQCSAELTSHSGLKRHKESFHHDGNTVYVCSDCGKISPSRVALLKHKKYVHQAIRRHKCTICDKAFKMPTELKEHMAAHTGQDLYQCPHCPKTFKACSNMHHHRKGAHPIEWAEARQNRLQINKVATNHDSNKVIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01115228; iTF_01114494;
90% Identity: iTF_01115228;
80% Identity: -