Basic Information

Insect: Crataerina pallida
Gene Symbol: -
Assembly: GCA_949710015.1
Location: OX453292.1:9520908-9524228[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.74 50 4.6 3.2 1 23 253 276 253 276 0.94

2 9 0.49 33 5.2 0.8 2 23 348 370 347 370 0.93

3 9 0.00041 0.028 14.9 1.7 1 23 669 691 669 691 0.96

4 9 0.0023 0.16 12.5 3.2 1 23 697 719 697 719 0.97

5 9 0.00051 0.035 14.5 0.8 1 23 725 747 725 747 0.99

6 9 9.5e-07 6.5e-05 23.1 0.1 1 23 753 775 753 775 0.99

7 9 7.2e-06 0.00049 20.4 0.5 1 23 781 803 781 803 0.98

8 9 1.4e-05 0.00097 19.4 2.6 1 23 811 833 811 833 0.99

9 9 6.8e-05 0.0046 17.3 1.0 1 23 839 862 839 862 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.74	50	4.6	3.2	1	23	253	276	253	276	0.94
2	9	0.49	33	5.2	0.8	2	23	348	370	347	370	0.93
3	9	0.00041	0.028	14.9	1.7	1	23	669	691	669	691	0.96
4	9	0.0023	0.16	12.5	3.2	1	23	697	719	697	719	0.97
5	9	0.00051	0.035	14.5	0.8	1	23	725	747	725	747	0.99
6	9	9.5e-07	6.5e-05	23.1	0.1	1	23	753	775	753	775	0.99
7	9	7.2e-06	0.00049	20.4	0.5	1	23	781	803	781	803	0.98
8	9	1.4e-05	0.00097	19.4	2.6	1	23	811	833	811	833	0.99
9	9	6.8e-05	0.0046	17.3	1.0	1	23	839	862	839	862	0.98

Sequence Information

Coding Sequence: ATGATCAATAACTCATTAGAGCATGTGCCCATTAATATGGAAGCTAAAGACACAAACACAACCACCAGTAAAAATGCGATTAATGTTAAGGGCAACAATGGCAACTTATTGGTAACAGTAACAACGACAGAGGTTACGAATAAAGAAGACATTGACCTTATGGATTTTGAGGAAGATGACTTCGAGGAAGAAGGGGAGGAGGAGGATTATGACGATGATGACGATTATGAAGATTCCGAGACAGATATATTAGATGATGTGGAAGCAGCCAGTCTATTAATTAGTAGCGAAGAAGAAGCTGAACTTGAAGCACAACGCATACGTTTCCctgtatacaaaaaaaaaaaagctaaatcgCTTGAGGTTGGGCAAGGCACAATGAGCACGCGCAACTTGCCAACTAAAGCTTCTTGTTCTCGTATAACAGCAGAAGCAAATGTAGTTAAGGCAACCACACCATCCAACATAGCTTCCGCATTGCCCACACAGGGAAAAGTTAAAAACCTGAAAGATATCACTCATACCACAGTAACTAATGCGGAGGGGCCAAAAAATGATGCAAGAGTTACTGCAGCAACCATAGCGACAATAGCAacgtcaacaacaacaacattgaatATTAATACTACCGTTGAAAGAGCACAAGGCCAATGTTCCACAGTTGGCATAAGTGGTGGTAGCCCTCTACCCGGCCCAATTACTATCCGTCAAACTTGCGGAAGCATTCTTGCACATTGTGCCGAAACGAAATTTGTATTCCATTGTGAATTTTGTGATATACACTACGGTGGCTTGGATAAGTTTACACGTCATTTACAGGATACTCATAAACTGTTGGGCCCAGATAAAGAACATGAGAAAGAGAATTCACCGCGAAACAATACGCATAAGCTGATAAATACGATTAGCAGATGTGATTTGAATGTGAAAAAAGAACCCCTTACCCCAGAACTGTTACCTGTTGAGCCTCTGCCCAGTATTAGTGACCCGTTAGAATTTTGTGCTCATATCTTCACAATAAATCAACGGAAGCTTTCGTTACATTGCGGCCAATGTGAAGACAAGTACGATGACATGGATTTACTAGAGAAGCACTTAAGGCAACAACatcaagtttttcaaaaaCGAAATACTAGCAATCAACTGGTGGATAATGTGCAACCTGAGGTAGTGGTTAAAAAAGAAGTTTACAATATTACGAAAGTGGTAGAGAGACCTCCTATACTAGAAGTAATCCCACCACACACCAAGGAGGTACCGCCAGTTACTGAAAAAATACCACGAGGGACCGAGATGATACCGCAGGTCACTGATAATATGAAAACACAAGTAACTgaaataatatctcaaatgCCTGAGACGGTACTAAAAGATGCTGGAGTGACAtcgaaaataaatgaaattcttgTTGCAACTTCCAAAGAGGATGTTAATGTATCTTTAGAAAAAGAAGCGCCCATTCCTAGTACTATGTCTACGGCTTCTGTAGGTGGGGTACTGCCCAATGAGGTATCTGTGCGCCCTGTCTGTACCGAAGAAATAGTACCGCCTAAATCTCCGCCCAAGGTATTAAGACGTCGTGGAAGACCgcccaaaaacaaaacaaaggaTATTCAGAAGCCCACTACCATTCCAGCAGAGCCGAAAAACTTACGCCAAACATTGAAACGTAAACTGCAACAAGATATTCAAACAAAAAACGACAACACGGAAAACTCAAAGCAGCCGAAAACTGTTGGCCGACGAAGTCGCAAAAGTGTTGCATCGCACATTCCACTTAATAAGGAAGCAAGAGGTTCACATGAAATTGATCAAGAATTAAGCAATCGAGAGTCTGTGGACAACAGTAAAGATGACGAgctaaaagaaagaaatgatAAGGACAAAACATCAGTGAACGAAGCTTGCTCTATCGAACAGCTTAGTATTCCGGCCTCTGTGCCGCCAATAAATTTACCCGCAGAAGCTGATTTGGATATTAATTTAACGATTCCCCTGAAACGTCACGCCTGTGAACAATGTGATCGCTCATTTGCTAAATATTCCCGCCTTCTGGAACATCAACGTTTGCATACCGGCGAGAAGCCGTTCAATTGCGACCAGTGTGGTAAACATTTTCGCATAAAAATGCGCCTGAATGAGCATCAATTGCGACACAACAAGGAGAAAAAGTACAAATGCGAAATGTGCGGCCTGGCTATGGCCACGCGTCAAGATTTAACGTTGCATATGCGTCATCATGCGGGCGACCGCCGCTACCAGTGCAATGCTTGTCCCAAGGCGTTCGTACGCAGTTCAGATTTGAAAATTCACGTACGCATACATACGGGAGAAAAACCGTACGTTTGTGATATATGCAGTAAATCATTCCGAGCCAATCAGAATCTCATCGTACACAAGCGATCACACATGGGCGACGACAGTAAAGCGTACAAATGTGAACAATGTGATAAACGTTTCATGCGTAATATGGATCGTAAAGTGCACATGCGTACACACACTGGCGAGAAGCCGTACAAGTGTGAGATATGTCAACGCGGCTATTCGTCCCGGGTGCACGTACGCGCTCATATTCAGCGTGAACATGTGGCACCCAATGGGATTGGTCTGCCGCCCAAAGGAAAAAGAAAGCCCGGCCCCAAACCGAAAGCGTTGAAGGAGGAGCTGgccaaacaaaaaaagttaataGAAGAATTAAAGCAGCAGCTCATGCAAAAAATGAAGACCGATGAAAAAGTCGAGGTAGACGAGCTGGCGACGTGTGGAAGTGGCATCGGCAAACAGGAGCCGGACAGCCCATGTGATGAAATGCCAAAAATGAATTCACCAAAACCTCCCCTATGTGAATCGCCCACAGTGAACGGCCAAGACAGGCAAGGGAAGAAACCCACCGCGGCAGTTATATCACCCCTAACTATAACAACACGTCGAATTGAACCACCCTCTCCCACAACACCCAATGCCACAAATCAAATCATAAACACTACAGATAGCAACGTTGACGGCACAACTACTACCACGACCACGATGGCCAAGGTGGTGACTCCGAAATCTGCTTCTTTGGGTATACAACAAGTATCGGTGACAGTGTCCATGCAAGTGGGGAATGTAGATGATAACCGGCgcgaaaaagaaaattctgGCTGTTTACGATCCAACTTGAAATTGACCACAACACCACCTAGCGGTGCAAGTGATGCGAAGAAGGAACGTAAAATCACTAGCTATTTCACCGTTATAGGACAAAAGAATGAAATTTAA
Protein Sequence: MINNSLEHVPINMEAKDTNTTTSKNAINVKGNNGNLLVTVTTTEVTNKEDIDLMDFEEDDFEEEGEEEDYDDDDDYEDSETDILDDVEAASLLISSEEEAELEAQRIRFPVYKKKKAKSLEVGQGTMSTRNLPTKASCSRITAEANVVKATTPSNIASALPTQGKVKNLKDITHTTVTNAEGPKNDARVTAATIATIATSTTTTLNINTTVERAQGQCSTVGISGGSPLPGPITIRQTCGSILAHCAETKFVFHCEFCDIHYGGLDKFTRHLQDTHKLLGPDKEHEKENSPRNNTHKLINTISRCDLNVKKEPLTPELLPVEPLPSISDPLEFCAHIFTINQRKLSLHCGQCEDKYDDMDLLEKHLRQQHQVFQKRNTSNQLVDNVQPEVVVKKEVYNITKVVERPPILEVIPPHTKEVPPVTEKIPRGTEMIPQVTDNMKTQVTEIISQMPETVLKDAGVTSKINEILVATSKEDVNVSLEKEAPIPSTMSTASVGGVLPNEVSVRPVCTEEIVPPKSPPKVLRRRGRPPKNKTKDIQKPTTIPAEPKNLRQTLKRKLQQDIQTKNDNTENSKQPKTVGRRSRKSVASHIPLNKEARGSHEIDQELSNRESVDNSKDDELKERNDKDKTSVNEACSIEQLSIPASVPPINLPAEADLDINLTIPLKRHACEQCDRSFAKYSRLLEHQRLHTGEKPFNCDQCGKHFRIKMRLNEHQLRHNKEKKYKCEMCGLAMATRQDLTLHMRHHAGDRRYQCNACPKAFVRSSDLKIHVRIHTGEKPYVCDICSKSFRANQNLIVHKRSHMGDDSKAYKCEQCDKRFMRNMDRKVHMRTHTGEKPYKCEICQRGYSSRVHVRAHIQREHVAPNGIGLPPKGKRKPGPKPKALKEELAKQKKLIEELKQQLMQKMKTDEKVEVDELATCGSGIGKQEPDSPCDEMPKMNSPKPPLCESPTVNGQDRQGKKPTAAVISPLTITTRRIEPPSPTTPNATNQIINTTDSNVDGTTTTTTTMAKVVTPKSASLGIQQVSVTVSMQVGNVDDNRREKENSGCLRSNLKLTTTPPSGASDAKKERKITSYFTVIGQKNEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01115218;
90% Identity: iTF_01115218;
80% Identity: -