Basic Information

Insect: Crataerina pallida
Gene Symbol: -
Assembly: GCA_949710015.1
Location: OX453289.1:32708233-32714682[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.052 3.5 8.2 0.1 3 23 103 123 101 123 0.96

2 15 0.0062 0.42 11.1 2.4 1 23 129 152 129 152 0.91

3 15 0.35 24 5.6 0.2 3 23 157 179 155 179 0.86

4 15 0.0016 0.11 13.0 0.3 1 22 187 208 187 208 0.96

5 15 1.6e-05 0.0011 19.3 2.5 1 23 216 238 216 238 0.98

6 15 0.025 1.7 9.2 4.7 1 23 244 266 244 266 0.97

7 15 0.00019 0.013 15.9 2.8 1 23 272 294 272 294 0.97

8 15 0.5 34 5.1 0.8 2 23 719 741 718 741 0.94

9 15 0.033 2.3 8.8 0.3 1 23 765 787 765 787 0.92

10 15 0.28 19 5.9 3.6 1 23 795 819 795 819 0.92

11 15 0.0074 0.5 10.9 0.3 1 21 861 881 861 882 0.94

12 15 0.00012 0.0084 16.5 0.9 1 23 890 912 890 912 0.98

13 15 5.7e-05 0.0039 17.6 2.2 1 23 918 941 918 941 0.97

14 15 3.8e-05 0.0026 18.1 1.2 1 23 947 969 947 969 0.98

15 15 0.0013 0.086 13.3 1.1 1 21 975 995 975 996 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.052	3.5	8.2	0.1	3	23	103	123	101	123	0.96
2	15	0.0062	0.42	11.1	2.4	1	23	129	152	129	152	0.91
3	15	0.35	24	5.6	0.2	3	23	157	179	155	179	0.86
4	15	0.0016	0.11	13.0	0.3	1	22	187	208	187	208	0.96
5	15	1.6e-05	0.0011	19.3	2.5	1	23	216	238	216	238	0.98
6	15	0.025	1.7	9.2	4.7	1	23	244	266	244	266	0.97
7	15	0.00019	0.013	15.9	2.8	1	23	272	294	272	294	0.97
8	15	0.5	34	5.1	0.8	2	23	719	741	718	741	0.94
9	15	0.033	2.3	8.8	0.3	1	23	765	787	765	787	0.92
10	15	0.28	19	5.9	3.6	1	23	795	819	795	819	0.92
11	15	0.0074	0.5	10.9	0.3	1	21	861	881	861	882	0.94
12	15	0.00012	0.0084	16.5	0.9	1	23	890	912	890	912	0.98
13	15	5.7e-05	0.0039	17.6	2.2	1	23	918	941	918	941	0.97
14	15	3.8e-05	0.0026	18.1	1.2	1	23	947	969	947	969	0.98
15	15	0.0013	0.086	13.3	1.1	1	21	975	995	975	996	0.92

Sequence Information

Coding Sequence: ATGGAATACCGTCAGGGCCAGGACGCGCCACCAACAGTACAGGAAGAGTTCGATGTATTTGTAACAACGTTGAGTGTAGAATTATCTACAATAGTAACCTCATCGTTTACAGAAGCAACCGGAACCCCAGCAGGAACAGAAGGGACTGTATTAACCAATATGGGACCGCCATTGAGTTTTAAAGAAGCTAGAGGGACCGGTCCACTAGCCTCTGACGataatatatcatataaagTGACCAACAGTTCAAGTGTAAAAAAAGCTACTTTAGTGAAACTGTCTACGGAGGGTGTACCAAAACTGTTTTGTCCTGTCTGCAGTAAGGCTTTAATATCTCTGAACGGTTACGTAAAGCACGTTAAAAAACATGAACCTCCCGGTGGTTTTATTTGCCGTTACTGTGAATCTCGCTTCTGCACAGAGGATGAATTAAGGCGACATCGCGATGCCAATCACATGACGTTAGCGTGTCGCTTATGCAAAGCGGTCAACTTTACAAACGAAGAGGACTACCGCACACACATTCGTGTAGAACATAATGGCATCGATCGGGAATTGTTTAAATGCAACAAATGTGGAGCCGAGTATAAAACGGTTGATCCCTACCGGCGTCATATGAGCACCGAGTGTGGCACCATCAAACCTTACAAATGTGATCAGTGTTCCATGTCGTTTGTCACCAAATACAACCTGAAGCAGCATAAAGAATCACACAGCGGTGCGTCCAAGTACTGCTGCAGCTATTGTGGGAAACATTTCTTACAAAAAGGTCGTCTTGTAGAGCATGAACGTTCGCACACGGGCGAAAAACCCTATAAATGTGATGTGTGCGGTAAATGTTTTGCTCATCGGGAAAGTATAGTCACGCATACCACCATACATACGGGCATTCGTTTGGTGGAATGTAGATGCTGTCAGTCTCGGTTTTCCTGTTACtccaatttaataaaacatcgCCGAACACGTCCAGATACCTGCGGTTTGCCGCAATACGATCCACCCAAGAATCGTGTACGCAAACACACTTCAAGAATACCAGCCACCGTTAATCCCACGTCCGAGATACGGGTGAGCAATGTTAACAAAATCATTAAACCCGACGATCAACAGAAGTTGAGCAATTTAAAGAAGGAGAACTGCTCCACTAGAAAATCCAATAAGCCGCAAACGGTTGCCAAGAGAACtcgtaaaaagaaaatgttgacTGCCAGTGCAGAAAGTGATCTGGCGACAAACAACGAAGGCAGCAATAACGCTGAGAGAGTGAagctcaaaaaatatttagaatccTCCCCCTCCAGCGCCGAGAATACTAAAACTGAGCCGTTGGCAAATTGCGGTGATAGTGTGGCGCACCACAATAATGATGCGGAGTTTTCTCGTTTGGACTCTTTGAACGATTCGGATGTGGATGATGAAAGAAAGGATGAATTTGGATCACTCGACCCTGTGCCTTCGGAAGCAGAAATTAAACAAGAAAACGATGATCTGGAAGTAGCGGGTAGAGGTGGTGCGAGGCCAGCCCTTGTAAAAGTGTTGCATGACTTTGAGTGCACCTTGGTGCATAGCATTCCTGCAACGACCGACATCACCGCCGTGCAAATCAAATCCGAAGAAGTGAACGAATGTGGGGTGATGCAGAATTGTTTGAGATTTTTAAGCGATTGCCACCTCGAAGATGACATTCCGCTGAAGCATTatcaaagaaacaaaaacaaattaatcgAGCACAAGCACGTGTTGGACATTTTGGAAGAAACCGAactgatactgatcaagaatgagGAAAACAATGTCCAGGTGCCCTTGGAGGAAGACATACTAAACACGCAGCCGGATGTGAATGGTGAGTGGGATGGTTGTACCGTACTGCTGGAGGATGTGACCAAACATTATCCCGAACTCAAGGAGCGTGCGTCAATAAAAGTATCCCGTAACGCCAAAGCGACGAGAAGGAAatgtcaaaataaaaaaatttataaaaattcggCCATTTTACGATTCACAACGTCAAGGGCTTTGAAGCATACGGCGCCGAGAGACAACGAGAGGAAACTGGAAAAGGAGCGCAAGCGATCGTTTCGCTTggcgaaaatttcccaaagggAGCTGAAGGAACGCTTGCAGTTGACCAAAAAGGTGGAGAGCCATTGGCAGTGTCCGCACTGCATTAAAATCTACTATATGCGCAAACCCTATGAAAAGCACTTGAGGGACGATCACCAGCGACCGGAGCAAGAAATACGGGAGATTTTCAAGAGGGACCACACATCCGTAGTGACTGAAGAGGCCTTCAAGTGTCCGATATGcgataaaatatatttgatggAGAAACGTTTAAAAGATCACATCGTGCGGCATGGCCCGGATGGCAAGCTGCTGTACAAGTGTCCGTGCTATTGTAATTTGTACTTTGGCACGCGAGACGAGGCCACCAAGCATGCCCATCTGCAGCACAAGGACATGTTGTGGTGTGAGTTGTGTCAGAAATTTATGACCGGGCATGAGGCACTCAAGTCTCACAACGCCCGTAAGCACGGCCAGGCAAAGGATGCAGTCAACAACAGTACAAAAAGGAATTTCATTTGTGACAAGTGTGGGAAGAAGTTCCTGGGTCGCACCCAACTGACGGACCATGTCCGCTCGGATTGTGGCCGTTTGCCCATCTACCAGTGCACGGAGTGCGGCAAATGTTTAACCACGGCGGGCATTTTAAAAACTCACATGCTGCTGCACAAGAACGAGTGTCCCTTCAAGTGCGAGCAGTGCGGTAAAGCGTTCAAAATTAAAGCCCAGTACAAGTCGCACCTGAAGTATCGCCACAGCGACGAGAAGCACTTTAAGTGTCACTTATGCCCCAAAGCGTATCCGTACCGGGAAAGCCTCTTGACACATATGACCGTGCATACGGGTATTAAGCGTTTCCTGTGCAATGGTTGCGGTAAACGCTTTACGTGTGTTTCCAATTTGCAAGCACATCGCAAGGTGCAGGCGGACACCTGTGGCCTGTTACCTCTGAATGCCAAAGCCACCCAGTACATGGGAGTGCAGAAGGGTAACCTGTTAATGGGAGCTAAACCGGAGGCTGGCTTGGATTATGTGGAAACCAATACACTGGTGGCCAGGGAGGTGTTAAATCGCAACCAGCCCATGGCCCAAGAGCTGAACAACAGCCACTCAAATGATGATTTGCCATCTATACCTGCACCACCAATCATGCCAGATGCACAATTGTTGCAGACGGTCCTTCCCCGAAATCATTCCGGTCCAGCTACTGAATTAATCCACCCATCGTGCGATTACTCATgcaatgaaattattattaaataa
Protein Sequence: MEYRQGQDAPPTVQEEFDVFVTTLSVELSTIVTSSFTEATGTPAGTEGTVLTNMGPPLSFKEARGTGPLASDDNISYKVTNSSSVKKATLVKLSTEGVPKLFCPVCSKALISLNGYVKHVKKHEPPGGFICRYCESRFCTEDELRRHRDANHMTLACRLCKAVNFTNEEDYRTHIRVEHNGIDRELFKCNKCGAEYKTVDPYRRHMSTECGTIKPYKCDQCSMSFVTKYNLKQHKESHSGASKYCCSYCGKHFLQKGRLVEHERSHTGEKPYKCDVCGKCFAHRESIVTHTTIHTGIRLVECRCCQSRFSCYSNLIKHRRTRPDTCGLPQYDPPKNRVRKHTSRIPATVNPTSEIRVSNVNKIIKPDDQQKLSNLKKENCSTRKSNKPQTVAKRTRKKKMLTASAESDLATNNEGSNNAERVKLKKYLESSPSSAENTKTEPLANCGDSVAHHNNDAEFSRLDSLNDSDVDDERKDEFGSLDPVPSEAEIKQENDDLEVAGRGGARPALVKVLHDFECTLVHSIPATTDITAVQIKSEEVNECGVMQNCLRFLSDCHLEDDIPLKHYQRNKNKLIEHKHVLDILEETELILIKNEENNVQVPLEEDILNTQPDVNGEWDGCTVLLEDVTKHYPELKERASIKVSRNAKATRRKCQNKKIYKNSAILRFTTSRALKHTAPRDNERKLEKERKRSFRLAKISQRELKERLQLTKKVESHWQCPHCIKIYYMRKPYEKHLRDDHQRPEQEIREIFKRDHTSVVTEEAFKCPICDKIYLMEKRLKDHIVRHGPDGKLLYKCPCYCNLYFGTRDEATKHAHLQHKDMLWCELCQKFMTGHEALKSHNARKHGQAKDAVNNSTKRNFICDKCGKKFLGRTQLTDHVRSDCGRLPIYQCTECGKCLTTAGILKTHMLLHKNECPFKCEQCGKAFKIKAQYKSHLKYRHSDEKHFKCHLCPKAYPYRESLLTHMTVHTGIKRFLCNGCGKRFTCVSNLQAHRKVQADTCGLLPLNAKATQYMGVQKGNLLMGAKPEAGLDYVETNTLVAREVLNRNQPMAQELNNSHSNDDLPSIPAPPIMPDAQLLQTVLPRNHSGPATELIHPSCDYSCNEIIIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -