Cpal007186.2
Basic Information
- Insect
- Crataerina pallida
- Gene Symbol
- -
- Assembly
- GCA_949710015.1
- Location
- OX453291.1:2540953-2546917[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.6e-07 1.1e-05 25.5 1.6 2 23 153 174 153 174 0.97 2 9 2.7e-07 1.8e-05 24.9 1.6 1 23 180 202 180 202 0.98 3 9 1e-07 7e-06 26.2 0.6 1 23 208 230 208 230 0.98 4 9 5.7e-06 0.00038 20.7 0.5 4 23 241 260 236 261 0.92 5 9 5.8e-05 0.0039 17.5 2.9 1 23 266 288 266 288 0.97 6 9 2.9e-05 0.0019 18.5 3.6 1 23 294 317 294 317 0.98 7 9 0.00056 0.038 14.4 2.0 1 23 323 345 323 345 0.98 8 9 7.6e-06 0.00051 20.3 1.2 1 23 350 372 350 372 0.98 9 9 0.002 0.14 12.7 0.3 3 23 380 403 378 403 0.93
Sequence Information
- Coding Sequence
- ATGGAAAGCATTTGTAGGCTGTGTTTTCAACCAGCAGCgTTGTTTCAGGTCCCTGGATATAATATACCCACTTGTGTCAAGTGTTCGGAGCATTTGACTAGTGGTGGTAACGGTTTTTATCAAACAgttacagcaacaacagccaCGGCGGCAGCGGCGGCAGCAGCAGTGGCTAGTGGAGTAGCAGCTGCCAATGCAGCAAACGCTGCCACTAACGGTACATCTTTGAATCAGCAACAGCAACCACAAATAcagcaattacaacaacaaaattccaACAACGATACTATACAAAATAACGGTGAAACGGACGAACCCGAGCAGCAACTGCGACAAACGCGCCGACCGCGACAGAACggtgttaaaaataaattacagcAAATCACCATGTCCTCCTTCGAATTGGAGAAAACCATACAACAGTTAGATGTGGACTTGATATTTAATGAGGAGGGTTCTTGTCCTCTGtgcaataaaacattttcccGTAAATCTTCACTATTGACCCACATACGTAACCATGCGGTGGAGAGAAAATTCGTGTGCACCTATTGTCACAAAGGCTTCACCCAAGCAGCTAATTTAAGAAACCATGAACGGATACATACCAATGACCGCCCATATGTGTGTGGTGATTGTGGCAAAACCTTTACGCAGatcacCAATCTAAACAATCATCGGCGTTTGCATACGGGCGAGCGGCCATTTGTGTGCATAGAGCCGGAATGCGGGCGATCCTTTGCTCAGGTCACCAATCTTAATAACCATATGAAGACCCACCATAAGGTTCAGCAGTATTGTTGCAACCAGTGCCCCAAGAAATTCACACAAGTTACGTCGCTCAATCAACATTTGCAGGCGCACGCGGGCATTACAGGGTACTATTGTCCGCGCTGTCCGGAAAAAACGTTCAAACAACAATCACAATTGCACACTCACATGAAATCTCATGGGCTGGCCTTTCCCTTTGAATGCTCGAAATGTGATGAGAAATTCTTGCAGCAAGCTCACTTGGATCAGCATTTAAAAATGCACGATGAGTTCAAATTCAAATGCAATATATGTCCTAGTTCATTTAATCAGGAGTCTTTGCTGAAAAAGCACGAGCAACGCCATTTAGAGGGCAGATACCTCGCCTGCCCGGTGGCCAATTGCAATGAATCGTTTGCCGTGCGCCAACATCTCTCCAAGCATCTGCTGAACAGTCATTCGCACACAGAGCTGCCGCCGCCGAAACgttcaaaaaaatcaataacacTGCAACCACCGCAACCTCAGCCTGTCACCATGATTGGTCAGCCTCTATCGCTGCAACATGCGCCACAACGTGGTCGTCCtccaaaacacaaaaacaagagtTCTGTTAATAATGTGAGTGGTTTATCAATACCACAGCAACTGAATCAACacttacaacaacagcaacagcaacaacagcagcagcaacaacagcaacagcaacaacaattattgcaacagcagcagcaggaacaacagcagcaacatttGGCATTAGTCAATCAAACGAAAGTGCGTTTCATATCCAATaataatcaaatcaaataa
- Protein Sequence
- MESICRLCFQPAALFQVPGYNIPTCVKCSEHLTSGGNGFYQTVTATTATAAAAAAAVASGVAAANAANAATNGTSLNQQQQPQIQQLQQQNSNNDTIQNNGETDEPEQQLRQTRRPRQNGVKNKLQQITMSSFELEKTIQQLDVDLIFNEEGSCPLCNKTFSRKSSLLTHIRNHAVERKFVCTYCHKGFTQAANLRNHERIHTNDRPYVCGDCGKTFTQITNLNNHRRLHTGERPFVCIEPECGRSFAQVTNLNNHMKTHHKVQQYCCNQCPKKFTQVTSLNQHLQAHAGITGYYCPRCPEKTFKQQSQLHTHMKSHGLAFPFECSKCDEKFLQQAHLDQHLKMHDEFKFKCNICPSSFNQESLLKKHEQRHLEGRYLACPVANCNESFAVRQHLSKHLLNSHSHTELPPPKRSKKSITLQPPQPQPVTMIGQPLSLQHAPQRGRPPKHKNKSSVNNVSGLSIPQQLNQHLQQQQQQQQQQQQQQQQQQLLQQQQQEQQQQHLALVNQTKVRFISNNNQIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00748401;
- 90% Identity
- iTF_01115168; iTF_01114424;
- 80% Identity
- -