Cpal007175.1
Basic Information
- Insect
- Crataerina pallida
- Gene Symbol
- -
- Assembly
- GCA_949710015.1
- Location
- OX453291.1:2465120-2467145[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.6e-05 0.0011 19.3 0.5 2 23 133 155 132 155 0.96 2 11 0.0023 0.16 12.5 2.3 1 20 297 316 297 319 0.95 3 11 5e-06 0.00034 20.9 3.6 1 23 325 348 325 348 0.95 4 11 0.0093 0.63 10.6 3.0 1 23 354 377 354 377 0.97 5 11 0.0032 0.22 12.0 1.1 1 23 381 404 381 404 0.95 6 11 0.00084 0.057 13.9 3.0 1 23 408 431 408 431 0.97 7 11 2e-06 0.00013 22.1 1.3 1 23 437 459 437 459 0.96 8 11 2.8e-06 0.00019 21.6 1.4 1 23 465 487 465 487 0.98 9 11 1.2e-06 8.1e-05 22.8 2.0 3 23 495 515 493 515 0.96 10 11 2e-06 0.00014 22.1 2.3 1 23 521 543 521 543 0.99 11 11 0.0015 0.1 13.1 0.6 1 23 548 571 548 571 0.96
Sequence Information
- Coding Sequence
- atgaatgattttgaaaatatatgtcGAATATGTCTGAAAAAGGATAACAACTTATTCCCCATTAACAATGATGCACAATTTAAAGAAGGTCTTACCTATACCAATGCTGCAGTCActataattgaaataataaatgaatgcaCCAAATATCCCGTACAACATTTTGATCAACTACCTTTCCATATATGTAGTCGATGCAAGGAGGCAGCCTGCAATGCATACTTGTTTAAGCGTCAAACCGAAGAGTCCTATTGCCGCTTGAAGTCAATTGTTGATGCTTGTTGTCAGAAAGCAAAGGTGAAGGCaacaaaatttaccatatcAGAAAAGGCTTCGCCAACTGAAAAGAAAACGTTAAAACACCCAATAGAACATTTGCCACTGGATGATCCCAAAAGGTGCCCTATATGTGGAAGGTTTTTTGCAAAATCATATGGTGTAAGGCGACATTTACGCAATGTGCACAAACTTCGCAGAAAACAACAAATGCTCAGTTTATATGTGAACAAAACGCTGGGGCTGGAACGGGAAGGTGAGGGCGAATGCAATACTTTGGAAGAATACAGTGTGCAACCTCTAAAAGCAAATTTAGAATCCAGTAAACATATAATCCctgaaaattattgtaaagtaACGGAATCCAATGAAAGCAAAGATGTTGTAAGTGAGGCAAAGCAGTTGAGTAGGCCTTCAAAAGCAGCTCCAACTTCTGATATCTCCAAAAACGAGGAATTGTCGAcgacaaatttaatacatgAAAGCAAATGCTTCTTAGATAAACAGGAGGAAGAAAACTTGGAAGATAAGAACGAAATCTTAAAAGGAACAACAACACCGAAAACGAACCAGAATACAATAAAGAGAAATTCCTCCTCCAAAAAAGAGACATATATATGCGAGCAGTGCGGACGAGTTTGCATTAGTCGCAAACTTTTATTACGCCACCTGGCATGCCACAAAGATACGAAGCCGTACGCTTGTTCTAGTTGTGATAAAAGTTTTAAGCGCTCGGAACATTTACGTAGACACGTGACTAGTAAGCACAACGATTTAAAACTGTTTAAATGTGATCGGTGTACTGCTGCTTATAAAGATGCTTTTAAGTTGCAGCATCACAAAGAAACGCGGCATGATAAACAATTCGCCTGTGACCTGTGCGCTATGAAATTTACTACAATAACATATTTGAATAAACATAAACGATTGCAACATGATCGTGCACACCCCTGCGAACACTGTTCGGAAACATTTATGGAcgtgaaaaaattgaaagaacATCAAAAGACAGCTCACGCCTTTCTGCGCGATTATTTATGCAGTGTTTGTGGCCTTCGTTTCAGGCGTAAGGAATTCCTTAATATTCATATGCGTCGGCATACTGGCGAAAGGCCGTATAAATGCAAATTATGCGATAAGGGCTTCCCCCGTAGCACGGACTTGAAAATGCACGAAAGGTATCATCTTGGCATCAGACCGCATCTGTGTAATGTTTGCGGTAAAGGTTTTCATCGTCCCTATAGTCTTGCTGTACATATGCGCACCCATACGGGTGAGAAACCCTACAAATGTTCGCAATGCCCACAAGCGTTTGTTCAGAGTAATGATTTAAAAACTCACATGCGCCATCATACGGGTGAACCGTTCCGGTGTTATTTTTGTGAAGCAACTTTTGGTCAACGCTACGGCTTACGATCCCACCTTAAAGCGGCACATGGTATACATGTTTTAAAAGTACCGTTTACTAATGAGATGGCACAAAAAGAATTACTTACCGCTAATCATCAGAAAAAGCAACAGGCGGAGGAGGAGGATAAGGGTAAGGAAAGCGATTGCGCCCTATAcgttttttaa
- Protein Sequence
- MNDFENICRICLKKDNNLFPINNDAQFKEGLTYTNAAVTIIEIINECTKYPVQHFDQLPFHICSRCKEAACNAYLFKRQTEESYCRLKSIVDACCQKAKVKATKFTISEKASPTEKKTLKHPIEHLPLDDPKRCPICGRFFAKSYGVRRHLRNVHKLRRKQQMLSLYVNKTLGLEREGEGECNTLEEYSVQPLKANLESSKHIIPENYCKVTESNESKDVVSEAKQLSRPSKAAPTSDISKNEELSTTNLIHESKCFLDKQEEENLEDKNEILKGTTTPKTNQNTIKRNSSSKKETYICEQCGRVCISRKLLLRHLACHKDTKPYACSSCDKSFKRSEHLRRHVTSKHNDLKLFKCDRCTAAYKDAFKLQHHKETRHDKQFACDLCAMKFTTITYLNKHKRLQHDRAHPCEHCSETFMDVKKLKEHQKTAHAFLRDYLCSVCGLRFRRKEFLNIHMRRHTGERPYKCKLCDKGFPRSTDLKMHERYHLGIRPHLCNVCGKGFHRPYSLAVHMRTHTGEKPYKCSQCPQAFVQSNDLKTHMRHHTGEPFRCYFCEATFGQRYGLRSHLKAAHGIHVLKVPFTNEMAQKELLTANHQKKQQAEEEDKGKESDCALYVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01115169; iTF_01114426;
- 90% Identity
- iTF_01114426; iTF_01115169;
- 80% Identity
- -