Basic Information

Insect: Crataerina pallida
Gene Symbol: -
Assembly: GCA_949710015.1
Location: OX453293.1:23540248-23542732[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0038 0.26 11.8 1.1 1 19 310 328 310 333 0.94

2 12 0.005 0.34 11.4 6.2 1 23 342 364 342 364 0.97

3 12 0.0016 0.11 12.9 0.8 2 23 372 393 372 393 0.97

4 12 1.1e-06 7.5e-05 22.9 1.9 1 23 399 421 399 421 0.99

5 12 1.4e-05 0.00096 19.5 3.2 1 23 428 450 428 450 0.98

6 12 4.9e-06 0.00034 20.9 0.9 1 23 456 478 456 478 0.98

7 12 0.00015 0.0099 16.3 0.1 1 23 484 506 484 506 0.97

8 12 4.8e-06 0.00032 20.9 1.3 1 23 512 535 512 535 0.97

9 12 0.0013 0.087 13.3 4.3 1 23 541 564 541 564 0.92

10 12 1.1e-06 7.3e-05 23.0 0.7 1 23 570 592 570 592 0.99

11 12 5.1e-05 0.0035 17.7 0.7 1 23 598 620 598 620 0.96

12 12 0.0036 0.25 11.9 0.4 1 23 626 650 626 650 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0038	0.26	11.8	1.1	1	19	310	328	310	333	0.94
2	12	0.005	0.34	11.4	6.2	1	23	342	364	342	364	0.97
3	12	0.0016	0.11	12.9	0.8	2	23	372	393	372	393	0.97
4	12	1.1e-06	7.5e-05	22.9	1.9	1	23	399	421	399	421	0.99
5	12	1.4e-05	0.00096	19.5	3.2	1	23	428	450	428	450	0.98
6	12	4.9e-06	0.00034	20.9	0.9	1	23	456	478	456	478	0.98
7	12	0.00015	0.0099	16.3	0.1	1	23	484	506	484	506	0.97
8	12	4.8e-06	0.00032	20.9	1.3	1	23	512	535	512	535	0.97
9	12	0.0013	0.087	13.3	4.3	1	23	541	564	541	564	0.92
10	12	1.1e-06	7.3e-05	23.0	0.7	1	23	570	592	570	592	0.99
11	12	5.1e-05	0.0035	17.7	0.7	1	23	598	620	598	620	0.96
12	12	0.0036	0.25	11.9	0.4	1	23	626	650	626	650	0.93

Sequence Information

Coding Sequence: ATGGAGGCAAAATGCTATTTGTGTGATCATGAGTTTGTTGAAGGGGAGGAGCCCTGGTTGATATTTGAGCAACGTGTATGTGAAGATGGTATTGTGGAATCATCATTGGCGGACTTGTTGTGCCTTATTTTAAACCATACACTTGATGAACAACATGCCCATTCTCCATACCTCTGTGATTCATGTAACGCTGACGTTATGGAATTCGAGAGTTTGGATCGTCGCTTAAAAGAAGTCCATAGTAGAATATTGGATTATTACAGGCAAAATGctacattaaataatttatgccTCGATTCAGAGGCTATAGTTAAACCAGAGGAGACAAATTTAACTCTTAATGGAGAAGAAATATACCTGCCGGAAAATACTGCTATGCTGGGAGACTTGGTTGTAGAAATACGAAATGAGGAAGAAAATAAGTCATCTTCCTTTAACAATTTGAATCAATTTCATTTTGCAGCCTTTGATGGAGATAACTCTGAAACATCGCTGCCATCTGCAGTGCTTGCTATGACTGAAAGTCTAGATCTAAAGGTGCCTAAAGACAATTTGTGCACTCAAAATATAACCGAAGAAAAGGAAGatatcaTAATATTTGACATATATGACAATACAATTCAATCGGGCGAAATTGAAAATGCCTTAAATTTTCAAGTGGATTCACCGTGTAGCGAAAGTAAAGtttttattaacGATGATTATACGCTTACTCCAGAAGTCTCGTTAACCGATACAAATGATAATGAACCGGAATCAGTTAAAGAAATTCATTTATCAATTAACGACACCTCATCCATTGTGGACTCTTCTCCCCGAGCTGTTTGTAAGAAACGAggtgtaatttatttatgtttattgtgcaACGTTTCACCCCAATTTGAGCGCACAACAATTGGAgaacatttacaaaaattccaTCACATTTATATGTGTGAATTGTGTAATGAGGGTTTTGCTCGCGAGCAATCATTGAAGAAGCATTGCGAACTAGATCATACATCGTGCGATTCTGATGATACATTCCATTGTGATATTTGTTCAATTACCTTCACCAATTCTCACAAGTTCCGCCTGCACAAGGAAACACATAACAATTATTCCAAGAATCGCGAGTGTCAAGTGTGCctgaaaaattacaattccAAACTTATGTTGAACGATCACATGAACACCCACACCGGACAAAGACCATATAAATGCGTAGAATGTTCCAAAGATTTTGCTTCCAAGTATACTTTGCAGACACACATGAAAACTCATAGTAAACGTGAAAGGCCTTACAAATGCGATCGCTGCGACAAAGCGTTCTTCAATCAACAAAATCTTAAACAGCATAAGAAACTTCATGTGCCCTTCAAGGCATTTAGCTGTGATGTGTGTTTGAAAACTTTTGTTACGCAACATAGCCTGAATGTACATATGATTGTGCACTCTGGCCAAAAGCCGTTTATATGTCGCGTTTGTGGAAAAGCATTTGCTCGACGACCTGAAATTAAAGATCACGAACGTATCCACACCGGTGAAAAGCCTTTCAAGTGTGATTTGTGCCCTATGGCTTTCACTCAACGTTCCAATTTGATGTCACACAAAAAGTCAACGcatttcaatgaaaaattaCATCGTTGCAACCAGTGCGAACGTTCCTTTAAACGAAAGCGCTTATTGCACTACCATGTTCTGGCTGTGCACACAGGTGAACGGCCCTATAAATGCAATATATGCGGAGCTGGATTTGTGTATCCGGAACATTTCAAGAAGCATATGTTAATACATAGTAATCAAAAGCCGTTCGCGTGCGAAgtatgtggcaaaaaatttaatagtcGAGACAATCGCAATGCTCATCGTTTCGTACACAGTGACAAAAAGCCATACGAGTGTATGGAATGTGGGTCCGGTTTTATGCGTAAACCCTTTCTTCTGGCACACATGAAACGTACAAAACATGCCAACGATACAATTATCGTTAATCAGCCACAATTTTCCATTCAACAAGACTTGCCCTCGCAAGAAGATATAAACGATTCTTCTAACATTGAAAATAATCAACTCATTGCTAAAGTGAATGACACTAGTGAACTAATCGCCCAAATGATACCAAACTTTAATATAATACCTGATTCTTTAGCTCAAAAAAGTGAAACCGCCGAGGTTGGTACTTTCGTTGAGAGCGACAACCTTATGAAACACGATATAgataatgtaaaatatatagagTTTGATGATATAATCGAGGATGTTGGCAATCAAACGTTAACTTGGATTAATAATGAAGACTAA
Protein Sequence: MEAKCYLCDHEFVEGEEPWLIFEQRVCEDGIVESSLADLLCLILNHTLDEQHAHSPYLCDSCNADVMEFESLDRRLKEVHSRILDYYRQNATLNNLCLDSEAIVKPEETNLTLNGEEIYLPENTAMLGDLVVEIRNEEENKSSSFNNLNQFHFAAFDGDNSETSLPSAVLAMTESLDLKVPKDNLCTQNITEEKEDIIIFDIYDNTIQSGEIENALNFQVDSPCSESKVFINDDYTLTPEVSLTDTNDNEPESVKEIHLSINDTSSIVDSSPRAVCKKRGVIYLCLLCNVSPQFERTTIGEHLQKFHHIYMCELCNEGFAREQSLKKHCELDHTSCDSDDTFHCDICSITFTNSHKFRLHKETHNNYSKNRECQVCLKNYNSKLMLNDHMNTHTGQRPYKCVECSKDFASKYTLQTHMKTHSKRERPYKCDRCDKAFFNQQNLKQHKKLHVPFKAFSCDVCLKTFVTQHSLNVHMIVHSGQKPFICRVCGKAFARRPEIKDHERIHTGEKPFKCDLCPMAFTQRSNLMSHKKSTHFNEKLHRCNQCERSFKRKRLLHYHVLAVHTGERPYKCNICGAGFVYPEHFKKHMLIHSNQKPFACEVCGKKFNSRDNRNAHRFVHSDKKPYECMECGSGFMRKPFLLAHMKRTKHANDTIIVNQPQFSIQQDLPSQEDINDSSNIENNQLIAKVNDTSELIAQMIPNFNIIPDSLAQKSETAEVGTFVESDNLMKHDIDNVKYIEFDDIIEDVGNQTLTWINNED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01115161;
90% Identity: iTF_01114417;
80% Identity: -