Cpal007248.1
Basic Information
- Insect
- Crataerina pallida
- Gene Symbol
- -
- Assembly
- GCA_949710015.1
- Location
- OX453291.1:3505923-3508438[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.013 0.89 10.1 2.4 1 23 23 45 23 45 0.98 2 13 1.1e-05 0.00077 19.8 3.3 1 23 162 184 162 184 0.99 3 13 0.0013 0.09 13.2 3.4 1 23 190 212 190 212 0.97 4 13 4.3e-06 0.00029 21.1 2.2 1 23 218 240 218 240 0.96 5 13 5.1e-06 0.00034 20.9 1.1 1 20 246 265 246 268 0.93 6 13 0.0026 0.17 12.3 0.1 1 23 274 296 274 296 0.98 7 13 0.00065 0.044 14.2 3.6 1 23 302 325 302 325 0.97 8 13 7.3e-05 0.005 17.2 1.1 1 23 427 449 427 449 0.97 9 13 0.00097 0.066 13.7 3.4 1 23 455 477 455 477 0.98 10 13 0.00011 0.0075 16.6 0.6 5 23 487 505 483 505 0.91 11 13 0.00024 0.016 15.6 2.5 1 20 511 530 511 533 0.93 12 13 2.1e-06 0.00014 22.1 0.7 1 23 539 561 539 561 0.97 13 13 2.8e-05 0.0019 18.5 0.6 1 23 567 590 567 590 0.98
Sequence Information
- Coding Sequence
- atgtttaatgttgaaaataataaagtgtgcggcattatatgtataaatgagaaaaattatCTCGTGTTTCGATGCAATCATTGCAACCATGCTATAGATTCATTTGACGCTTTGACCACCCACTTAACCATTCATTACGACGAAGTAAGAGTAGAGAAATGTGTTGACTTGGTGGAAGGAGAGACATATCTGGAGTTTTCCGAATTGAATGAATCTCAGAGCCGTTGTAAAGAGATGCCTTTGAAATTGCAATTTATAGAAGAACAAGACACCATTATAGAATGTATGGAACCTGATCATAGCTGTGAAGAAATAAATGCAACGTTTTTAAATACAGATAACTCCGCACAATTTGATTTTAGTGAAAACAATATTCCTACAGTACATGATGCAACCACTCTTCAAAAGGATGCGCATTTATTGGAACATAACACTTCCAGTCGCAAAAGGAAACCACATTCTAAAGAAGAGACGTCCACtgcatataaatgtaaaatgtgcGGCTATTCTTATAagaataaatacattttgagAAAACATATGCTGCGTCATTCGGGTCGAAAGGAATTTTCCTGTTCTCAGTGTccgaaaatgttttatacacGGACTGAGGTGAAACTTCATGAACGCCATCATAGTGAAGAACGACCGTACTTGTGTACATTTTGTGGCAAAACGTTTGTTACAACCAGTAATATGTTTGAACATATGAAGCGTCATAAAAATATACGACCTTATAAATGTGAGGTGTGCGGTAAATCCTTTTATGAGAGGGCACATTTACGCGATCATATGCCAAGTCACAGCGATGAGCGTCTATTTCCTTGCCCCAAGTGTTCAGCTGCATTTAAATTGAGAAGAATTCTAAGAGCTCACATGCAAATCCACTTAAATAAACGTGAACATCGTTGCCATTTATGTGATGCTTCATATAATCAACGACCTGCTCTAAAATCACATCTCAAATCGAAACATGgAGCCTTTTcagaagaagaacaacaagACACACCGGGCCTAGAATACAGTGGAGTGGAGGAAACTGAATTATTAGAAAGTGATGTAGAAGAAATTCCAATAGAAGACAACTTTGATAGCGAAACGATTACAACAATTATAGAACCTGACGAATGTATAGAAATTGTCGAATATGAAGAATCTTTGGAAAAGCCTATTGAATATTCAGAATCTTCTTCAGAACCAAAGGAATCATCCTTAGTGACAGAGCCTAAAGCTGTAAAAAACAAGGGGAGACCAAGTTCGAAAAGGTGGTCCAATGAATTTCAATGTAAAGTGTGTGGTTCCAGCTTCAAGGATAAATATGTTTTGGCAAAACATAGCCTTCGGCATACTGGAAAAAAGGACTTTTCCTGTTCTCAATgttctaaaaaattttacacacgTACTGAGGTGAAACTCCATGAACGGCGTCACAACAACGAACGACCGTACTTGTGTATATTCTGCGGCAAAACATTTGTTACGACTAGTAACTTGGATGAACATATAAAACGACATGAAAGCGTACGTCCGCATAAATGTGATATATGTGGCAAAGGTTTCCATGACAAAGCTGAATTGTCACATCATCGTCCAGTGCATAGTGATGAGCGTGCCTTTGCTTGTGAAAAATGCCCATCAACTTTTAAGCAACAAAAAAGCCTACAAGCCCATATGAAAATCCATCTAAATAAACGGCAATATCGCTGTAAATTGTGTGGTGCTTCATTTAATCAAGGTCCCGCTCTTAAATCgcatcaaaaaacaaaacatcgTAATGATCAGAATGCaagtgattaa
- Protein Sequence
- MFNVENNKVCGIICINEKNYLVFRCNHCNHAIDSFDALTTHLTIHYDEVRVEKCVDLVEGETYLEFSELNESQSRCKEMPLKLQFIEEQDTIIECMEPDHSCEEINATFLNTDNSAQFDFSENNIPTVHDATTLQKDAHLLEHNTSSRKRKPHSKEETSTAYKCKMCGYSYKNKYILRKHMLRHSGRKEFSCSQCPKMFYTRTEVKLHERHHSEERPYLCTFCGKTFVTTSNMFEHMKRHKNIRPYKCEVCGKSFYERAHLRDHMPSHSDERLFPCPKCSAAFKLRRILRAHMQIHLNKREHRCHLCDASYNQRPALKSHLKSKHGAFSEEEQQDTPGLEYSGVEETELLESDVEEIPIEDNFDSETITTIIEPDECIEIVEYEESLEKPIEYSESSSEPKESSLVTEPKAVKNKGRPSSKRWSNEFQCKVCGSSFKDKYVLAKHSLRHTGKKDFSCSQCSKKFYTRTEVKLHERRHNNERPYLCIFCGKTFVTTSNLDEHIKRHESVRPHKCDICGKGFHDKAELSHHRPVHSDERAFACEKCPSTFKQQKSLQAHMKIHLNKRQYRCKLCGASFNQGPALKSHQKTKHRNDQNASD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01114408;
- 90% Identity
- iTF_01114408;
- 80% Identity
- -