Basic Information

Insect: Crataerina pallida
Gene Symbol: -
Assembly: GCA_949710015.1
Location: OX453293.1:1782495-1784651[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.36 24 5.6 0.0 1 14 78 91 78 95 0.84

2 13 0.61 41 4.9 0.6 1 19 163 181 163 184 0.85

3 13 0.011 0.75 10.4 0.1 2 19 199 216 199 219 0.93

4 13 6.1e-06 0.00042 20.6 1.3 1 23 239 261 239 261 0.98

5 13 3.3e-06 0.00022 21.4 1.2 2 23 278 299 278 299 0.97

6 13 7.4e-05 0.005 17.2 1.2 1 23 325 346 325 346 0.98

7 13 0.0011 0.071 13.6 1.8 1 23 352 374 352 374 0.98

8 13 0.00011 0.0072 16.7 0.3 1 23 399 421 399 421 0.98

9 13 4.5e-08 3.1e-06 27.3 0.3 1 23 427 449 427 449 0.99

10 13 0.0001 0.0071 16.7 5.3 1 23 455 477 455 477 0.99

11 13 6.4e-06 0.00043 20.5 3.9 1 23 483 505 483 505 0.98

12 13 9.2e-06 0.00062 20.0 0.2 1 23 509 531 509 531 0.98

13 13 0.0014 0.093 13.2 1.3 3 23 545 566 545 566 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.36	24	5.6	0.0	1	14	78	91	78	95	0.84
2	13	0.61	41	4.9	0.6	1	19	163	181	163	184	0.85
3	13	0.011	0.75	10.4	0.1	2	19	199	216	199	219	0.93
4	13	6.1e-06	0.00042	20.6	1.3	1	23	239	261	239	261	0.98
5	13	3.3e-06	0.00022	21.4	1.2	2	23	278	299	278	299	0.97
6	13	7.4e-05	0.005	17.2	1.2	1	23	325	346	325	346	0.98
7	13	0.0011	0.071	13.6	1.8	1	23	352	374	352	374	0.98
8	13	0.00011	0.0072	16.7	0.3	1	23	399	421	399	421	0.98
9	13	4.5e-08	3.1e-06	27.3	0.3	1	23	427	449	427	449	0.99
10	13	0.0001	0.0071	16.7	5.3	1	23	455	477	455	477	0.99
11	13	6.4e-06	0.00043	20.5	3.9	1	23	483	505	483	505	0.98
12	13	9.2e-06	0.00062	20.0	0.2	1	23	509	531	509	531	0.98
13	13	0.0014	0.093	13.2	1.3	3	23	545	566	545	566	0.97

Sequence Information

Coding Sequence: ATGGAGgAATATGTGGAATCTATAGACACGGAAGATGTTGAGGAGTAcgaacatttaatatattacgAAGAAGTAACGGATGATACCATTCAAATAGAAAGCCCTTGTGTGGAAATGGTTACAAACAATGATGAGGACAATTGTAATAAAGAAGCAATTAATAATGACTTGCTTAACCACGTTttgatattaaatgaaaatataaacgaAAATGGTGAAGTGGTGGGATCGTATCAATGTCAACAATGTGATATCGAGTTTGCCAGTATAGACGCATTTATAGAAGCGCACTCTTCTGTGGTTTCAGAGGAAAGGGATGTTTATAAAGAGCCTTCACCAGCAGATACGCCTCCTTTTGAACCGATAGATGATGTGGAACACGATAAAGAATACGTTTTTGTTGTAGATGAGGAAAATCGTGACTATTCAAATGAGGATGAATGCtctaataaaagtaaaaacgcAGTAGAACAATCAGAAGATCGTTACTTTTGCTATGATTGTCAGCAAGTGTTTGTGGATGTGACCACTGCTGAACAACATGAATGtttaaattcaacaaaaaaaacaagcatTGATGTAAATGACATCCGCGTGTGTTTATATTGTCAAGAGGTTTTCAATAGTAATGAAGAGTTGGTGTCTCATTTTGAGCAATGTGGATTAAAGAATAAAGAGACGGATACTGCCGATTGTGAACCATTTATTAACGTCTTTCGCTGTGATATATGTAATAAAGGCTTCACCACCCTGCGTGCACTTAGCAGTCATAAGCGTTCTCATAAGAAAAACACAACTTCTACTGCAATAGTGCTTCCCAATGTCCCCGCTGTATGCGATATATGTAAAACACAATTTTCATCGCAAAAGAATTTAAAATTACATatgaaaattcataataaaccTGAAGTCAAGTCTATACAAGATGCTTTGCCATCTGGGGCTCAAGATGAGTATGCGGAAATGGACCAATTCTATTGCGAAATATGTAACAAAAGTTTTGATCAGAACCTTTTAACCgtacataaaaatatgcatCAAAATGTTGAGGAGTACAACTGCAGCAAGTGCAACCGGAAATTTGAAAATCTGCTCAGTTTTGAGATGCATTTGCAAATGCATTCTGAAAAtcgaaatgttaaaaatgttataaaaaaggaTAACGTGCCACATGGTAATGAGCgcaaaaagaaatttccttGTCAATATTGTGGCCGTGAGTTCGGTCGACCGTATGAGAAAGTTAAGCATGAACGCGTTCATACGGGTGAAAAGCCTTATGAATGCGAAGTTTGTGGGAAAACCTTTCGCGTCCCATATTCCTTAACACTGCATTTGAGAACGCACACCGACATCAGGCCTTATGTTTGTCCCAATTGCAACAAACGTTTCAAGTCCCATTCGGTTTATGTGCATCATTTGAAAACTCATAATAACGAGAGACAGTATAAGTGTGAAATGTGTAGTAAAAGCTTTCGTACTTCGGTACAATTGTGTGCACACAAAAATAGTCACAACAAACCATTCGTTTGTACCGAATGCAATCGTCCGTTTGCTTCGCTGTACGCGGTCAAGATTCATATGAACACTCACAgtaaaaatcataaatcaaATAAGAATTTAAAGAATGGCTGTAGTATTTGTGGAGCGTCATATACCCGAATATTTGCTTTGCGTCACCATTTGAAACAACAGCATGGCATAGAGTTGGATTCTTTGGAAGGACAAGATAAGAATAAggttaataaaaagaaagtgtTCAATGTGAATTCAAATGCAGGAGCAACGGAGGATTTTGATGAAACGCAAGCTGCTACTCAAAGTATTTTGAGTAAAGAAGAGGTACGCATGCCTTTATAA
Protein Sequence: MEEYVESIDTEDVEEYEHLIYYEEVTDDTIQIESPCVEMVTNNDEDNCNKEAINNDLLNHVLILNENINENGEVVGSYQCQQCDIEFASIDAFIEAHSSVVSEERDVYKEPSPADTPPFEPIDDVEHDKEYVFVVDEENRDYSNEDECSNKSKNAVEQSEDRYFCYDCQQVFVDVTTAEQHECLNSTKKTSIDVNDIRVCLYCQEVFNSNEELVSHFEQCGLKNKETDTADCEPFINVFRCDICNKGFTTLRALSSHKRSHKKNTTSTAIVLPNVPAVCDICKTQFSSQKNLKLHMKIHNKPEVKSIQDALPSGAQDEYAEMDQFYCEICNKSFDQNLLTVHKNMHQNVEEYNCSKCNRKFENLLSFEMHLQMHSENRNVKNVIKKDNVPHGNERKKKFPCQYCGREFGRPYEKVKHERVHTGEKPYECEVCGKTFRVPYSLTLHLRTHTDIRPYVCPNCNKRFKSHSVYVHHLKTHNNERQYKCEMCSKSFRTSVQLCAHKNSHNKPFVCTECNRPFASLYAVKIHMNTHSKNHKSNKNLKNGCSICGASYTRIFALRHHLKQQHGIELDSLEGQDKNKVNKKKVFNVNSNAGATEDFDETQAATQSILSKEEVRMPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01115159; iTF_01114413; iTF_01114412;
90% Identity: iTF_01115159;
80% Identity: -